miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14570 5' -58.3 NC_003521.1 + 196846 1.06 0.004137
Target:  5'- uGACCCAGCGUCUCUGCACGUCCACCUc -3'
miRNA:   3'- -CUGGGUCGCAGAGACGUGCAGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 24193 0.76 0.382738
Target:  5'- -uCCCGGCGUCg--GCGCGcCCGCCUa -3'
miRNA:   3'- cuGGGUCGCAGagaCGUGCaGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 54505 0.75 0.415438
Target:  5'- cGGCCCGGCGUggaccaggaUCUGCACGgcgCCGCUg -3'
miRNA:   3'- -CUGGGUCGCAg--------AGACGUGCa--GGUGGa -5'
14570 5' -58.3 NC_003521.1 + 62795 0.74 0.467549
Target:  5'- gGGCCCGGCGUCUUUG-ACGaccguggCCGCCUc -3'
miRNA:   3'- -CUGGGUCGCAGAGACgUGCa------GGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 135655 0.74 0.485658
Target:  5'- gGGCCCAGCGUCggcgGCGuCGUcaCCACCUc -3'
miRNA:   3'- -CUGGGUCGCAGaga-CGU-GCA--GGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 128196 0.73 0.532294
Target:  5'- uGGCaCAGCGUCUUgaGCGCGUCCACg- -3'
miRNA:   3'- -CUGgGUCGCAGAGa-CGUGCAGGUGga -5'
14570 5' -58.3 NC_003521.1 + 110775 0.73 0.532294
Target:  5'- aGGCuCCAGgGUCUCgcuCAgGUCCACCUg -3'
miRNA:   3'- -CUG-GGUCgCAGAGac-GUgCAGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 63606 0.73 0.541822
Target:  5'- gGACCCAGCuGUCcgacCUGCAgCG-CCGCCUg -3'
miRNA:   3'- -CUGGGUCG-CAGa---GACGU-GCaGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 73211 0.72 0.56104
Target:  5'- cGACCCcgagcgccugcGGCGcCUCUGCGCG-CCGCUc -3'
miRNA:   3'- -CUGGG-----------UCGCaGAGACGUGCaGGUGGa -5'
14570 5' -58.3 NC_003521.1 + 190409 0.72 0.590195
Target:  5'- --gUCGGCGaugUCUCUGCccuACGUCCACCUc -3'
miRNA:   3'- cugGGUCGC---AGAGACG---UGCAGGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 94302 0.72 0.609783
Target:  5'- gGACCCGGguggagccgcCGUUUCUGCGgGUCgGCCg -3'
miRNA:   3'- -CUGGGUC----------GCAGAGACGUgCAGgUGGa -5'
14570 5' -58.3 NC_003521.1 + 135985 0.71 0.639262
Target:  5'- cGCCCAGCGUgUCgggggGcCGCGUCaCGCCc -3'
miRNA:   3'- cUGGGUCGCAgAGa----C-GUGCAG-GUGGa -5'
14570 5' -58.3 NC_003521.1 + 117572 0.71 0.639262
Target:  5'- cGAuCCCGGCGUCUacuggGCGCGgcgcuacgaCCACCUa -3'
miRNA:   3'- -CU-GGGUCGCAGAga---CGUGCa--------GGUGGA- -5'
14570 5' -58.3 NC_003521.1 + 142843 0.71 0.668694
Target:  5'- aACaCCAGCGUcCUCgGCAgCGUCCugCUc -3'
miRNA:   3'- cUG-GGUCGCA-GAGaCGU-GCAGGugGA- -5'
14570 5' -58.3 NC_003521.1 + 13851 0.71 0.668694
Target:  5'- uGGCUCGGCGcgggggUCUCUGCggGCGgcgCCGCCa -3'
miRNA:   3'- -CUGGGUCGC------AGAGACG--UGCa--GGUGGa -5'
14570 5' -58.3 NC_003521.1 + 74204 0.7 0.67846
Target:  5'- cGGCCCGacGcCGUCuUCUGcCACGUCCugCg -3'
miRNA:   3'- -CUGGGU--C-GCAG-AGAC-GUGCAGGugGa -5'
14570 5' -58.3 NC_003521.1 + 42799 0.7 0.67846
Target:  5'- aGCCCGGCGg--CUGCACGcgCCGCa- -3'
miRNA:   3'- cUGGGUCGCagaGACGUGCa-GGUGga -5'
14570 5' -58.3 NC_003521.1 + 121915 0.7 0.67846
Target:  5'- uGGCCCGGCccguggggUUgUGCACGUUCACCg -3'
miRNA:   3'- -CUGGGUCGca------GAgACGUGCAGGUGGa -5'
14570 5' -58.3 NC_003521.1 + 30226 0.7 0.688191
Target:  5'- cGGCCguuGGCGUCgcgCUGCAgGUCCGCg- -3'
miRNA:   3'- -CUGGg--UCGCAGa--GACGUgCAGGUGga -5'
14570 5' -58.3 NC_003521.1 + 183516 0.7 0.717094
Target:  5'- -uCCgAGCGUCUauuUUGC-CGUCCACCc -3'
miRNA:   3'- cuGGgUCGCAGA---GACGuGCAGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.