miRNA display CGI


Results 1 - 20 of 682 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14571 5' -56.1 NC_003521.1 + 123045 0.65 0.960341
Target:  5'- -gUGUCCGCCGCCACCaugcugcugggacgGCGGCGgcggaggagcUCCg -3'
miRNA:   3'- uuGCGGGUGGUGGUGG--------------UGUUGU----------AGGg -5'
14571 5' -56.1 NC_003521.1 + 164403 0.66 0.957858
Target:  5'- cAACGgUCGCCAgCACCACcACAcCgCCg -3'
miRNA:   3'- -UUGCgGGUGGUgGUGGUGuUGUaG-GG- -5'
14571 5' -56.1 NC_003521.1 + 137315 0.66 0.957858
Target:  5'- -uCGCgCGCCugCugCugGGCucgCCCu -3'
miRNA:   3'- uuGCGgGUGGugGugGugUUGua-GGG- -5'
14571 5' -56.1 NC_003521.1 + 211975 0.66 0.957858
Target:  5'- -gUGCCgCGCCGCCGCaGCucguCGUCCa -3'
miRNA:   3'- uuGCGG-GUGGUGGUGgUGuu--GUAGGg -5'
14571 5' -56.1 NC_003521.1 + 80264 0.66 0.957858
Target:  5'- cACGaCCACCACUaguAUCGCGccGCGUCUCu -3'
miRNA:   3'- uUGCgGGUGGUGG---UGGUGU--UGUAGGG- -5'
14571 5' -56.1 NC_003521.1 + 240442 0.66 0.957858
Target:  5'- cGCGCCagcacaCACuCACCuucguuCCACAGCAcgccgCCCa -3'
miRNA:   3'- uUGCGG------GUG-GUGGu-----GGUGUUGUa----GGG- -5'
14571 5' -56.1 NC_003521.1 + 68501 0.66 0.957858
Target:  5'- gGACGgCCgagGCCugCGCCAgCGGCGUCa- -3'
miRNA:   3'- -UUGCgGG---UGGugGUGGU-GUUGUAGgg -5'
14571 5' -56.1 NC_003521.1 + 16088 0.66 0.957858
Target:  5'- cGCGCUgGCCGCCugCGuCGGCGagcaCCa -3'
miRNA:   3'- uUGCGGgUGGUGGugGU-GUUGUag--GG- -5'
14571 5' -56.1 NC_003521.1 + 178249 0.66 0.957858
Target:  5'- cGAUGUUCACCAUC-UCGCAGCAugaUUCCg -3'
miRNA:   3'- -UUGCGGGUGGUGGuGGUGUUGU---AGGG- -5'
14571 5' -56.1 NC_003521.1 + 200120 0.66 0.957858
Target:  5'- cGCGCCagcacaCACuCACCuucguuCCACAGCAcgccgCCCa -3'
miRNA:   3'- uUGCGG------GUG-GUGGu-----GGUGUUGUa----GGG- -5'
14571 5' -56.1 NC_003521.1 + 16397 0.66 0.957858
Target:  5'- -cCGCUCGcCCACCA-CGCAGCG-CCUg -3'
miRNA:   3'- uuGCGGGU-GGUGGUgGUGUUGUaGGG- -5'
14571 5' -56.1 NC_003521.1 + 31545 0.66 0.957858
Target:  5'- cAGCGUCUGCgACCACUcgGCGAag-CCCa -3'
miRNA:   3'- -UUGCGGGUGgUGGUGG--UGUUguaGGG- -5'
14571 5' -56.1 NC_003521.1 + 140700 0.66 0.957858
Target:  5'- -nCGCaggACCGCCAgCCGCGggucGCAUCCUg -3'
miRNA:   3'- uuGCGgg-UGGUGGU-GGUGU----UGUAGGG- -5'
14571 5' -56.1 NC_003521.1 + 216015 0.66 0.957858
Target:  5'- --aGCCCACCAgCAagCGCAGgG-CCCa -3'
miRNA:   3'- uugCGGGUGGUgGUg-GUGUUgUaGGG- -5'
14571 5' -56.1 NC_003521.1 + 221090 0.66 0.957858
Target:  5'- cGACGCCguCACCGCCACgcuggucaGCAGCGUgUa -3'
miRNA:   3'- -UUGCGG--GUGGUGGUGg-------UGUUGUAgGg -5'
14571 5' -56.1 NC_003521.1 + 65427 0.66 0.957858
Target:  5'- -cUGaCCCACCugCGCCGgGucauGgGUCCCc -3'
miRNA:   3'- uuGC-GGGUGGugGUGGUgU----UgUAGGG- -5'
14571 5' -56.1 NC_003521.1 + 37279 0.66 0.957858
Target:  5'- uGACgGUgCACgCGCC-CUACGACAUCCa -3'
miRNA:   3'- -UUG-CGgGUG-GUGGuGGUGUUGUAGGg -5'
14571 5' -56.1 NC_003521.1 + 200925 0.66 0.957858
Target:  5'- cGACGCCUucccgcagucgGCCAacacCCugUACGGCG-CCCg -3'
miRNA:   3'- -UUGCGGG-----------UGGU----GGugGUGUUGUaGGG- -5'
14571 5' -56.1 NC_003521.1 + 119710 0.66 0.957858
Target:  5'- cGGCGUCCACCA--GCCuCAGCGggauggCCCc -3'
miRNA:   3'- -UUGCGGGUGGUggUGGuGUUGUa-----GGG- -5'
14571 5' -56.1 NC_003521.1 + 136250 0.66 0.957858
Target:  5'- cACGCCgGCCGCUacGCCgACGugAUUCa -3'
miRNA:   3'- uUGCGGgUGGUGG--UGG-UGUugUAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.