miRNA display CGI


Results 21 - 40 of 682 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14571 5' -56.1 NC_003521.1 + 136250 0.66 0.957858
Target:  5'- cACGCCgGCCGCUacGCCgACGugAUUCa -3'
miRNA:   3'- uUGCGGgUGGUGG--UGG-UGUugUAGGg -5'
14571 5' -56.1 NC_003521.1 + 194376 0.66 0.957858
Target:  5'- cGAgGCCgACCAgCCcCCGCAGC--CCCg -3'
miRNA:   3'- -UUgCGGgUGGU-GGuGGUGUUGuaGGG- -5'
14571 5' -56.1 NC_003521.1 + 200925 0.66 0.957858
Target:  5'- cGACGCCUucccgcagucgGCCAacacCCugUACGGCG-CCCg -3'
miRNA:   3'- -UUGCGGG-----------UGGU----GGugGUGUUGUaGGG- -5'
14571 5' -56.1 NC_003521.1 + 203834 0.66 0.957129
Target:  5'- cGACGCCCucgucgcggaugUCGCCGCCG-AGCA-CCCg -3'
miRNA:   3'- -UUGCGGGu-----------GGUGGUGGUgUUGUaGGG- -5'
14571 5' -56.1 NC_003521.1 + 218882 0.66 0.956761
Target:  5'- -uCGCCCACUagcuccagcccgagGCCGCCcgcCAGgGUCUCg -3'
miRNA:   3'- uuGCGGGUGG--------------UGGUGGu--GUUgUAGGG- -5'
14571 5' -56.1 NC_003521.1 + 61862 0.66 0.955646
Target:  5'- cGGCGCCUguccauGCgACCACCACGgauaGCGagcagaugccgccguUCCCc -3'
miRNA:   3'- -UUGCGGG------UGgUGGUGGUGU----UGU---------------AGGG- -5'
14571 5' -56.1 NC_003521.1 + 135357 0.66 0.954128
Target:  5'- cGCGCgCGCCGUCuCCGCGGCGguuaucgCCCg -3'
miRNA:   3'- uUGCGgGUGGUGGuGGUGUUGUa------GGG- -5'
14571 5' -56.1 NC_003521.1 + 5321 0.66 0.954128
Target:  5'- cGGCGUgCcCCGCCgGCCGCGAC-UCCg -3'
miRNA:   3'- -UUGCGgGuGGUGG-UGGUGUUGuAGGg -5'
14571 5' -56.1 NC_003521.1 + 80552 0.66 0.954128
Target:  5'- cGACGaCgGCUACCACCA-GGCAaCCCg -3'
miRNA:   3'- -UUGCgGgUGGUGGUGGUgUUGUaGGG- -5'
14571 5' -56.1 NC_003521.1 + 28937 0.66 0.954128
Target:  5'- uAUGgCCACUauACCACgCGCGGCG-CCCu -3'
miRNA:   3'- uUGCgGGUGG--UGGUG-GUGUUGUaGGG- -5'
14571 5' -56.1 NC_003521.1 + 187630 0.66 0.954128
Target:  5'- --aGCUCACCGgaggguUCACCgACGGCGUCgCCg -3'
miRNA:   3'- uugCGGGUGGU------GGUGG-UGUUGUAG-GG- -5'
14571 5' -56.1 NC_003521.1 + 91660 0.66 0.954128
Target:  5'- -gUGCCCGCgGCUcCCugGcGCAUUCCg -3'
miRNA:   3'- uuGCGGGUGgUGGuGGugU-UGUAGGG- -5'
14571 5' -56.1 NC_003521.1 + 37512 0.66 0.954128
Target:  5'- --gGCCCGCgGaCAUCAgCGACGUCCUg -3'
miRNA:   3'- uugCGGGUGgUgGUGGU-GUUGUAGGG- -5'
14571 5' -56.1 NC_003521.1 + 180711 0.66 0.954128
Target:  5'- aGAUGCCCAUCACCGuuAuCAGCAgCgCa -3'
miRNA:   3'- -UUGCGGGUGGUGGUggU-GUUGUaGgG- -5'
14571 5' -56.1 NC_003521.1 + 57814 0.66 0.954128
Target:  5'- cGACGCCCA--GCUGCCGCAugAagCUCg -3'
miRNA:   3'- -UUGCGGGUggUGGUGGUGUugUa-GGG- -5'
14571 5' -56.1 NC_003521.1 + 93419 0.66 0.954128
Target:  5'- -uCGUCC-UCACCGCCACGcgAUCCg -3'
miRNA:   3'- uuGCGGGuGGUGGUGGUGUugUAGGg -5'
14571 5' -56.1 NC_003521.1 + 56670 0.66 0.954128
Target:  5'- -cCGCUCGCgCACCAggUCGCAguaGCcgCCCa -3'
miRNA:   3'- uuGCGGGUG-GUGGU--GGUGU---UGuaGGG- -5'
14571 5' -56.1 NC_003521.1 + 141636 0.66 0.954128
Target:  5'- ---cUCCGCCGCCACCuuCAGCc-CCCa -3'
miRNA:   3'- uugcGGGUGGUGGUGGu-GUUGuaGGG- -5'
14571 5' -56.1 NC_003521.1 + 72607 0.66 0.954128
Target:  5'- gAGCGCgCUGCUcaAgCugCACAACAUCaCCg -3'
miRNA:   3'- -UUGCG-GGUGG--UgGugGUGUUGUAG-GG- -5'
14571 5' -56.1 NC_003521.1 + 138913 0.66 0.954128
Target:  5'- uACGCCgGCUcggugucggACCACgGCGgcugcuucuguuACAUCCCc -3'
miRNA:   3'- uUGCGGgUGG---------UGGUGgUGU------------UGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.