miRNA display CGI


Results 1 - 20 of 682 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14571 5' -56.1 NC_003521.1 + 142189 0.76 0.490358
Target:  5'- cGACGCCgcUACCGCCGCCGCcGCucucgCCCu -3'
miRNA:   3'- -UUGCGG--GUGGUGGUGGUGuUGua---GGG- -5'
14571 5' -56.1 NC_003521.1 + 222094 0.77 0.418697
Target:  5'- -cCGCCCugCAgCGCCGgCAGCGUCUCg -3'
miRNA:   3'- uuGCGGGugGUgGUGGU-GUUGUAGGG- -5'
14571 5' -56.1 NC_003521.1 + 127469 0.77 0.436026
Target:  5'- uGACGCCCGCCAgCGCCGagaugcGCGUCaCCa -3'
miRNA:   3'- -UUGCGGGUGGUgGUGGUgu----UGUAG-GG- -5'
14571 5' -56.1 NC_003521.1 + 118159 0.77 0.45376
Target:  5'- cGACGCCaCcCCACCGCCGCAGacgacgCCCg -3'
miRNA:   3'- -UUGCGG-GuGGUGGUGGUGUUgua---GGG- -5'
14571 5' -56.1 NC_003521.1 + 201591 0.77 0.45376
Target:  5'- gAACGCCCGCgGgCCACCGCu--GUCCCc -3'
miRNA:   3'- -UUGCGGGUGgU-GGUGGUGuugUAGGG- -5'
14571 5' -56.1 NC_003521.1 + 141056 0.76 0.47188
Target:  5'- --gGCCUGCUcgACCACCACAACGUCUg -3'
miRNA:   3'- uugCGGGUGG--UGGUGGUGUUGUAGGg -5'
14571 5' -56.1 NC_003521.1 + 220878 0.76 0.47188
Target:  5'- -cCGgCCACCAUCACCACGAUcucgCCCa -3'
miRNA:   3'- uuGCgGGUGGUGGUGGUGUUGua--GGG- -5'
14571 5' -56.1 NC_003521.1 + 187766 0.76 0.478308
Target:  5'- cGGCGCCCgaucaaagaagaacGCCGCCGUCACAGCGUCUg -3'
miRNA:   3'- -UUGCGGG--------------UGGUGGUGGUGUUGUAGGg -5'
14571 5' -56.1 NC_003521.1 + 142363 0.76 0.481076
Target:  5'- cGCGgCCGCCGCCGCCuccucCAACGUagCCCa -3'
miRNA:   3'- uUGCgGGUGGUGGUGGu----GUUGUA--GGG- -5'
14571 5' -56.1 NC_003521.1 + 164618 0.78 0.401793
Target:  5'- -cCGCCacucaUACCACCACCGCGACcgccUCCCg -3'
miRNA:   3'- uuGCGG-----GUGGUGGUGGUGUUGu---AGGG- -5'
14571 5' -56.1 NC_003521.1 + 116711 0.78 0.393506
Target:  5'- aAGCGCCguCCACUuCCACGGCgGUCCCg -3'
miRNA:   3'- -UUGCGGguGGUGGuGGUGUUG-UAGGG- -5'
14571 5' -56.1 NC_003521.1 + 212346 0.78 0.361486
Target:  5'- cACGCCCAUCACCAcCCGCugguGCAccgCCCa -3'
miRNA:   3'- uUGCGGGUGGUGGU-GGUGu---UGUa--GGG- -5'
14571 5' -56.1 NC_003521.1 + 69176 0.85 0.147795
Target:  5'- cGACGCCCGCCGCgGCCGCGcuagACAUaCCCg -3'
miRNA:   3'- -UUGCGGGUGGUGgUGGUGU----UGUA-GGG- -5'
14571 5' -56.1 NC_003521.1 + 72808 0.83 0.198687
Target:  5'- cACGCCUACCACCACCAgCAGCAgcaggCUCa -3'
miRNA:   3'- uUGCGGGUGGUGGUGGU-GUUGUa----GGG- -5'
14571 5' -56.1 NC_003521.1 + 133558 0.8 0.289631
Target:  5'- cAGCGCCUAUCAgCGCCuacgucagaGCGACAUCCCg -3'
miRNA:   3'- -UUGCGGGUGGUgGUGG---------UGUUGUAGGG- -5'
14571 5' -56.1 NC_003521.1 + 126080 0.8 0.303055
Target:  5'- uGugGCCgCGCCACCcCCACGGCGUgCCg -3'
miRNA:   3'- -UugCGG-GUGGUGGuGGUGUUGUAgGG- -5'
14571 5' -56.1 NC_003521.1 + 224988 0.79 0.324079
Target:  5'- -uCGCCCACCAgCACCACGcACuugCCCa -3'
miRNA:   3'- uuGCGGGUGGUgGUGGUGU-UGua-GGG- -5'
14571 5' -56.1 NC_003521.1 + 114521 0.79 0.338688
Target:  5'- -gUGCCCACCGCCGCCACgGGCA-CCa -3'
miRNA:   3'- uuGCGGGUGGUGGUGGUG-UUGUaGGg -5'
14571 5' -56.1 NC_003521.1 + 142288 0.79 0.338688
Target:  5'- --gGaCCCGCCGCCGCUGCAGCggCCCa -3'
miRNA:   3'- uugC-GGGUGGUGGUGGUGUUGuaGGG- -5'
14571 5' -56.1 NC_003521.1 + 45484 0.79 0.353769
Target:  5'- --gGCCCACCACCACgGCAGCcUUCUa -3'
miRNA:   3'- uugCGGGUGGUGGUGgUGUUGuAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.