miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14572 3' -59.2 NC_003521.1 + 200047 1.1 0.001834
Target:  5'- uGACGCAACGCUGCCUCACCGGCUGGCu -3'
miRNA:   3'- -CUGCGUUGCGACGGAGUGGCCGACCG- -5'
14572 3' -59.2 NC_003521.1 + 240369 1.1 0.001834
Target:  5'- uGACGCAACGCUGCCUCACCGGCUGGCu -3'
miRNA:   3'- -CUGCGUUGCGACGGAGUGGCCGACCG- -5'
14572 3' -59.2 NC_003521.1 + 16409 0.82 0.147832
Target:  5'- cACGCAGCGCcugGCCggcgaggugUACCGGCUGGCc -3'
miRNA:   3'- cUGCGUUGCGa--CGGa--------GUGGCCGACCG- -5'
14572 3' -59.2 NC_003521.1 + 224809 0.82 0.151498
Target:  5'- cGCGCGugGCguaggGCgUCugCGGCUGGCg -3'
miRNA:   3'- cUGCGUugCGa----CGgAGugGCCGACCG- -5'
14572 3' -59.2 NC_003521.1 + 150971 0.78 0.267293
Target:  5'- cGACGCGGCGCUggcgGCCgaCAUCGGCUacGGCg -3'
miRNA:   3'- -CUGCGUUGCGA----CGGa-GUGGCCGA--CCG- -5'
14572 3' -59.2 NC_003521.1 + 72597 0.77 0.277756
Target:  5'- aGGCGCucaagagcGCGCUGCUcaagcugcacaacaUCACCGuGCUGGCg -3'
miRNA:   3'- -CUGCGu-------UGCGACGG--------------AGUGGC-CGACCG- -5'
14572 3' -59.2 NC_003521.1 + 209737 0.77 0.312466
Target:  5'- uGCGCAGCggcagccacgGCaGCCggagUACCGGCUGGCa -3'
miRNA:   3'- cUGCGUUG----------CGaCGGa---GUGGCCGACCG- -5'
14572 3' -59.2 NC_003521.1 + 2710 0.76 0.319373
Target:  5'- aACGCcacucgugcgggAGCGCcgucaccGCCUCGCUGGCUGGCu -3'
miRNA:   3'- cUGCG------------UUGCGa------CGGAGUGGCCGACCG- -5'
14572 3' -59.2 NC_003521.1 + 14097 0.76 0.347397
Target:  5'- aGCGCAacgagggACGCUGCCUgugucugggucCGCCgaagGGCUGGCa -3'
miRNA:   3'- cUGCGU-------UGCGACGGA-----------GUGG----CCGACCG- -5'
14572 3' -59.2 NC_003521.1 + 138667 0.76 0.348138
Target:  5'- aGACGgGGCGgUgaGCCUCACCGGCgacaaGGCc -3'
miRNA:   3'- -CUGCgUUGCgA--CGGAGUGGCCGa----CCG- -5'
14572 3' -59.2 NC_003521.1 + 88066 0.75 0.361673
Target:  5'- cGACGCcguuccgcGCGCUGCCcguggaggacaACCGGCUGGUg -3'
miRNA:   3'- -CUGCGu-------UGCGACGGag---------UGGCCGACCG- -5'
14572 3' -59.2 NC_003521.1 + 238452 0.75 0.363199
Target:  5'- aGGCGCAGgGCgGCCUCgGCgGGCggGGCg -3'
miRNA:   3'- -CUGCGUUgCGaCGGAG-UGgCCGa-CCG- -5'
14572 3' -59.2 NC_003521.1 + 38224 0.75 0.363199
Target:  5'- aGGCGCAGgGCgGCCUCgGCgGGCggGGCg -3'
miRNA:   3'- -CUGCGUUgCGaCGGAG-UGgCCGa-CCG- -5'
14572 3' -59.2 NC_003521.1 + 129981 0.75 0.378706
Target:  5'- -gUGCAccguCGCUGCCgcugCGCCGGCggcGGCg -3'
miRNA:   3'- cuGCGUu---GCGACGGa---GUGGCCGa--CCG- -5'
14572 3' -59.2 NC_003521.1 + 187468 0.75 0.378706
Target:  5'- aGCGgGACGgUGCUgcaCAUCGGCUGGCc -3'
miRNA:   3'- cUGCgUUGCgACGGa--GUGGCCGACCG- -5'
14572 3' -59.2 NC_003521.1 + 170961 0.75 0.378706
Target:  5'- uGGCGCuGCGCggcgGCCUCAUCGGCa-GCg -3'
miRNA:   3'- -CUGCGuUGCGa---CGGAGUGGCCGacCG- -5'
14572 3' -59.2 NC_003521.1 + 163791 0.75 0.386625
Target:  5'- -cUGCAACGCcuucuacgGCUUCACCGGCgUGGUc -3'
miRNA:   3'- cuGCGUUGCGa-------CGGAGUGGCCG-ACCG- -5'
14572 3' -59.2 NC_003521.1 + 97278 0.74 0.427812
Target:  5'- --gGCGGCuGCUGCUcgUCGCCGGC-GGCg -3'
miRNA:   3'- cugCGUUG-CGACGG--AGUGGCCGaCCG- -5'
14572 3' -59.2 NC_003521.1 + 48780 0.74 0.436357
Target:  5'- gGACGCcGCGuCUGCCgcgcaCGCCGGC-GGUg -3'
miRNA:   3'- -CUGCGuUGC-GACGGa----GUGGCCGaCCG- -5'
14572 3' -59.2 NC_003521.1 + 150038 0.73 0.462566
Target:  5'- uGCGCGACGCcacGCUgCACCGGgUGGUc -3'
miRNA:   3'- cUGCGUUGCGa--CGGaGUGGCCgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.