miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14573 3' -57.5 NC_003521.1 + 200784 1.06 0.004986
Target:  5'- uAAUCGCCGUCCGCGAUCCACACCGACu -3'
miRNA:   3'- -UUAGCGGCAGGCGCUAGGUGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 557 1.06 0.004986
Target:  5'- uAAUCGCCGUCCGCGAUCCACACCGACu -3'
miRNA:   3'- -UUAGCGGCAGGCGCUAGGUGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 223014 0.8 0.248092
Target:  5'- gGGUCGUCGUCCGcCGGUCgcacggccagCACGCCGACg -3'
miRNA:   3'- -UUAGCGGCAGGC-GCUAG----------GUGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 204025 0.76 0.435647
Target:  5'- --cCGCCGUCCGCGAgcggcUCCGCAgCG-Cg -3'
miRNA:   3'- uuaGCGGCAGGCGCU-----AGGUGUgGCuG- -5'
14573 3' -57.5 NC_003521.1 + 73297 0.75 0.489209
Target:  5'- uAUCGCCGUCUGuCGucaCCAcCGCCGACu -3'
miRNA:   3'- uUAGCGGCAGGC-GCua-GGU-GUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 90568 0.74 0.526572
Target:  5'- ---gGCCGgCCGCGGUgCAgGCCGACg -3'
miRNA:   3'- uuagCGGCaGGCGCUAgGUgUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 166234 0.74 0.536083
Target:  5'- --gCGCCGgCCGCGGgacgCCGCGCCGcCg -3'
miRNA:   3'- uuaGCGGCaGGCGCUa---GGUGUGGCuG- -5'
14573 3' -57.5 NC_003521.1 + 101904 0.74 0.536083
Target:  5'- ---aGCCG-CCGUGGUCCgACACCGAg -3'
miRNA:   3'- uuagCGGCaGGCGCUAGG-UGUGGCUg -5'
14573 3' -57.5 NC_003521.1 + 187574 0.74 0.545654
Target:  5'- -uUCGCCaaGUCCGCGGgggCUuCGCCGGCg -3'
miRNA:   3'- uuAGCGG--CAGGCGCUa--GGuGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 234430 0.74 0.545654
Target:  5'- cGUCGCCG-CCGCGGUa-GCugCGGCg -3'
miRNA:   3'- uUAGCGGCaGGCGCUAggUGugGCUG- -5'
14573 3' -57.5 NC_003521.1 + 195204 0.73 0.564953
Target:  5'- cGGUgGCCGUCUGCG-UCgGCGCUGAUg -3'
miRNA:   3'- -UUAgCGGCAGGCGCuAGgUGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 129575 0.73 0.574671
Target:  5'- cGAUgGCUGcUCCGcCGcgCCGCGCCGGCc -3'
miRNA:   3'- -UUAgCGGC-AGGC-GCuaGGUGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 17222 0.73 0.584426
Target:  5'- cGUCGCCGUCgCGCGGUauggCAagcgaGCCGGCg -3'
miRNA:   3'- uUAGCGGCAG-GCGCUAg---GUg----UGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 234486 0.73 0.584426
Target:  5'- -uUCGUCuUCCGCgGAUCCuauCGCCGGCa -3'
miRNA:   3'- uuAGCGGcAGGCG-CUAGGu--GUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 224223 0.73 0.594214
Target:  5'- --aCGcCCGUagUCGCGGUCCACACCG-Cu -3'
miRNA:   3'- uuaGC-GGCA--GGCGCUAGGUGUGGCuG- -5'
14573 3' -57.5 NC_003521.1 + 85439 0.73 0.604027
Target:  5'- --cCGCCGgccUCGUcGUCCGCGCCGGCg -3'
miRNA:   3'- uuaGCGGCa--GGCGcUAGGUGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 162363 0.73 0.604027
Target:  5'- --gCGCCGggCCGCGuucccagCCGCGCCGAa -3'
miRNA:   3'- uuaGCGGCa-GGCGCua-----GGUGUGGCUg -5'
14573 3' -57.5 NC_003521.1 + 71503 0.73 0.604027
Target:  5'- --aCGCCGgCCGCGAcgCUGCgACCGACg -3'
miRNA:   3'- uuaGCGGCaGGCGCUa-GGUG-UGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 26312 0.73 0.604027
Target:  5'- --gCGCUGUCCGCGcuUCCAgGgCCGGCu -3'
miRNA:   3'- uuaGCGGCAGGCGCu-AGGUgU-GGCUG- -5'
14573 3' -57.5 NC_003521.1 + 146909 0.73 0.604027
Target:  5'- uAGUCGCCGcuugCCGCGAccagCCACGCCc-- -3'
miRNA:   3'- -UUAGCGGCa---GGCGCUa---GGUGUGGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.