miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14573 3' -57.5 NC_003521.1 + 212251 0.71 0.692384
Target:  5'- --cCGCCGUCCGCGuagUCGgugGCCGGCg -3'
miRNA:   3'- uuaGCGGCAGGCGCua-GGUg--UGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 85439 0.73 0.604027
Target:  5'- --cCGCCGgccUCGUcGUCCGCGCCGGCg -3'
miRNA:   3'- uuaGCGGCa--GGCGcUAGGUGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 34719 0.72 0.623705
Target:  5'- --gCGCCGUgCGCG-UCCACgaacaccggguACCGACa -3'
miRNA:   3'- uuaGCGGCAgGCGCuAGGUG-----------UGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 114099 0.72 0.623705
Target:  5'- uGAUCGCCGaCCGCgccgccucgGAUCUgcuCACCGGCa -3'
miRNA:   3'- -UUAGCGGCaGGCG---------CUAGGu--GUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 209529 0.72 0.623705
Target:  5'- cGUCGCCGcugCCGCGGUUaugCGC-CCGGCg -3'
miRNA:   3'- uUAGCGGCa--GGCGCUAG---GUGuGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 85314 0.72 0.647344
Target:  5'- cGUCGCCGUcgcuccagccuuggcCCGCGGcCCGCcgcagGCCGGCg -3'
miRNA:   3'- uUAGCGGCA---------------GGCGCUaGGUG-----UGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 72710 0.72 0.653248
Target:  5'- uGUCGUCcUCgGCGAUCCACGCCu-- -3'
miRNA:   3'- uUAGCGGcAGgCGCUAGGUGUGGcug -5'
14573 3' -57.5 NC_003521.1 + 192180 0.72 0.653248
Target:  5'- --gCGCCGgUCGCGG-CCACACCGGu -3'
miRNA:   3'- uuaGCGGCaGGCGCUaGGUGUGGCUg -5'
14573 3' -57.5 NC_003521.1 + 123352 0.71 0.672877
Target:  5'- --gCGCCGcggCCGUGGccuccgacagCCGCACCGACa -3'
miRNA:   3'- uuaGCGGCa--GGCGCUa---------GGUGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 162363 0.73 0.604027
Target:  5'- --gCGCCGggCCGCGuucccagCCGCGCCGAa -3'
miRNA:   3'- uuaGCGGCa-GGCGCua-----GGUGUGGCUg -5'
14573 3' -57.5 NC_003521.1 + 146909 0.73 0.604027
Target:  5'- uAGUCGCCGcuugCCGCGAccagCCACGCCc-- -3'
miRNA:   3'- -UUAGCGGCa---GGCGCUa---GGUGUGGcug -5'
14573 3' -57.5 NC_003521.1 + 71503 0.73 0.604027
Target:  5'- --aCGCCGgCCGCGAcgCUGCgACCGACg -3'
miRNA:   3'- uuaGCGGCaGGCGCUa-GGUG-UGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 223014 0.8 0.248092
Target:  5'- gGGUCGUCGUCCGcCGGUCgcacggccagCACGCCGACg -3'
miRNA:   3'- -UUAGCGGCAGGC-GCUAG----------GUGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 204025 0.76 0.435647
Target:  5'- --cCGCCGUCCGCGAgcggcUCCGCAgCG-Cg -3'
miRNA:   3'- uuaGCGGCAGGCGCU-----AGGUGUgGCuG- -5'
14573 3' -57.5 NC_003521.1 + 187574 0.74 0.545654
Target:  5'- -uUCGCCaaGUCCGCGGgggCUuCGCCGGCg -3'
miRNA:   3'- uuAGCGG--CAGGCGCUa--GGuGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 129575 0.73 0.574671
Target:  5'- cGAUgGCUGcUCCGcCGcgCCGCGCCGGCc -3'
miRNA:   3'- -UUAgCGGC-AGGC-GCuaGGUGUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 234486 0.73 0.584426
Target:  5'- -uUCGUCuUCCGCgGAUCCuauCGCCGGCa -3'
miRNA:   3'- uuAGCGGcAGGCG-CUAGGu--GUGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 17222 0.73 0.584426
Target:  5'- cGUCGCCGUCgCGCGGUauggCAagcgaGCCGGCg -3'
miRNA:   3'- uUAGCGGCAG-GCGCUAg---GUg----UGGCUG- -5'
14573 3' -57.5 NC_003521.1 + 224223 0.73 0.594214
Target:  5'- --aCGcCCGUagUCGCGGUCCACACCG-Cu -3'
miRNA:   3'- uuaGC-GGCA--GGCGCUAGGUGUGGCuG- -5'
14573 3' -57.5 NC_003521.1 + 26312 0.73 0.604027
Target:  5'- --gCGCUGUCCGCGcuUCCAgGgCCGGCu -3'
miRNA:   3'- uuaGCGGCAGGCGCu-AGGUgU-GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.