miRNA display CGI


Results 1 - 20 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14574 3' -57 NC_003521.1 + 104190 0.65 0.942939
Target:  5'- cCGCCCCGcgcccguggccgauuACGUGCugcuGCAGCCCagcgaggacguggagCugCGCg -3'
miRNA:   3'- -GUGGGGU---------------UGCACG----UGUUGGG---------------GugGUG- -5'
14574 3' -57 NC_003521.1 + 85322 0.66 0.939342
Target:  5'- uCGCUCCAGCcuugGCccGCGGCCC-GCCGCa -3'
miRNA:   3'- -GUGGGGUUGca--CG--UGUUGGGgUGGUG- -5'
14574 3' -57 NC_003521.1 + 31283 0.66 0.939342
Target:  5'- cCACCCCGcCGgGCGCAuaaCCGCgGCa -3'
miRNA:   3'- -GUGGGGUuGCaCGUGUuggGGUGgUG- -5'
14574 3' -57 NC_003521.1 + 144102 0.66 0.939342
Target:  5'- uGCCUCAuGCGgcUGCugGACCgCCGCgGCc -3'
miRNA:   3'- gUGGGGU-UGC--ACGugUUGG-GGUGgUG- -5'
14574 3' -57 NC_003521.1 + 209105 0.66 0.939342
Target:  5'- gGCCgCGGCGUcccagcacgcGCACAugCugCCGCCGCc -3'
miRNA:   3'- gUGGgGUUGCA----------CGUGUugG--GGUGGUG- -5'
14574 3' -57 NC_003521.1 + 18989 0.66 0.939342
Target:  5'- aCGCCCaCAGCG-GC-CAGCUgUugCACa -3'
miRNA:   3'- -GUGGG-GUUGCaCGuGUUGGgGugGUG- -5'
14574 3' -57 NC_003521.1 + 88603 0.66 0.939342
Target:  5'- aUugCCCAcagccACGUGCGCcguGACCUCGuCCGg -3'
miRNA:   3'- -GugGGGU-----UGCACGUG---UUGGGGU-GGUg -5'
14574 3' -57 NC_003521.1 + 67374 0.66 0.939342
Target:  5'- cUACCgCCggUGU-CAC--CCCCACCACc -3'
miRNA:   3'- -GUGG-GGuuGCAcGUGuuGGGGUGGUG- -5'
14574 3' -57 NC_003521.1 + 129308 0.66 0.939342
Target:  5'- aACUUgAugGCGUGCGCcGCCgCCGCCAg -3'
miRNA:   3'- gUGGGgU--UGCACGUGuUGG-GGUGGUg -5'
14574 3' -57 NC_003521.1 + 85179 0.66 0.939342
Target:  5'- cCACCCagcACG-GCGCuucugcuACCaCCGCCGCc -3'
miRNA:   3'- -GUGGGgu-UGCaCGUGu------UGG-GGUGGUG- -5'
14574 3' -57 NC_003521.1 + 123609 0.66 0.939342
Target:  5'- gGCCgUCAGCGggUGCgACAuCUCCACCGCc -3'
miRNA:   3'- gUGG-GGUUGC--ACG-UGUuGGGGUGGUG- -5'
14574 3' -57 NC_003521.1 + 161331 0.66 0.937957
Target:  5'- gCGCUCCGGCGUGCAgAagcaguucaugcagAUCgUGCCGCg -3'
miRNA:   3'- -GUGGGGUUGCACGUgU--------------UGGgGUGGUG- -5'
14574 3' -57 NC_003521.1 + 101128 0.66 0.934646
Target:  5'- -uCCCCGugcuggccaaucGCGUGCuGCAguACCUCAuCCACg -3'
miRNA:   3'- guGGGGU------------UGCACG-UGU--UGGGGU-GGUG- -5'
14574 3' -57 NC_003521.1 + 171711 0.66 0.934646
Target:  5'- uCAUCCaCAAuaacacCGUGCACAcCaaguaCCACCACg -3'
miRNA:   3'- -GUGGG-GUU------GCACGUGUuGg----GGUGGUG- -5'
14574 3' -57 NC_003521.1 + 141579 0.66 0.934646
Target:  5'- cCACCaCGACGUcgucuucgucGCACAcCCCCaaaggACCGCg -3'
miRNA:   3'- -GUGGgGUUGCA----------CGUGUuGGGG-----UGGUG- -5'
14574 3' -57 NC_003521.1 + 150896 0.66 0.934646
Target:  5'- gCACgCCGGCGUcaucgacuGCGC-GCCCUuCCACg -3'
miRNA:   3'- -GUGgGGUUGCA--------CGUGuUGGGGuGGUG- -5'
14574 3' -57 NC_003521.1 + 214075 0.66 0.934646
Target:  5'- -gUCCCAGCGcGC-CGACCaCAUCACg -3'
miRNA:   3'- guGGGGUUGCaCGuGUUGGgGUGGUG- -5'
14574 3' -57 NC_003521.1 + 28294 0.66 0.934646
Target:  5'- aCACCgaCAACGagagcagcgGCAgCGACCCCGgCGCg -3'
miRNA:   3'- -GUGGg-GUUGCa--------CGU-GUUGGGGUgGUG- -5'
14574 3' -57 NC_003521.1 + 110022 0.66 0.934646
Target:  5'- gCACCCgGcucuCGUGgGCGcgcugcggugACCCCGCCGa -3'
miRNA:   3'- -GUGGGgUu---GCACgUGU----------UGGGGUGGUg -5'
14574 3' -57 NC_003521.1 + 128471 0.66 0.934646
Target:  5'- aGCCgCC-GCGUGCguacggugugGCAaucACCCCGCCGu -3'
miRNA:   3'- gUGG-GGuUGCACG----------UGU---UGGGGUGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.