miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14574 3' -57 NC_003521.1 + 725 1.1 0.003213
Target:  5'- cCACCCCAACGUGCACAACCCCACCACg -3'
miRNA:   3'- -GUGGGGUUGCACGUGUUGGGGUGGUG- -5'
14574 3' -57 NC_003521.1 + 1060 0.7 0.760209
Target:  5'- gGCCaCCGACcUGCGcCAGCuCUCGCCGCg -3'
miRNA:   3'- gUGG-GGUUGcACGU-GUUG-GGGUGGUG- -5'
14574 3' -57 NC_003521.1 + 1091 0.67 0.9078
Target:  5'- gACCCCuggauCGUGCugGugGCCaCCAucguCCACg -3'
miRNA:   3'- gUGGGGuu---GCACGugU--UGG-GGU----GGUG- -5'
14574 3' -57 NC_003521.1 + 2429 0.7 0.778455
Target:  5'- gGCCCCGcugggACGcccUGCACGuucauccccgcGCCCCGCUAUg -3'
miRNA:   3'- gUGGGGU-----UGC---ACGUGU-----------UGGGGUGGUG- -5'
14574 3' -57 NC_003521.1 + 3638 0.71 0.683634
Target:  5'- -uCUCUAGCGUGcCACGGCCgCCGCCGu -3'
miRNA:   3'- guGGGGUUGCAC-GUGUUGG-GGUGGUg -5'
14574 3' -57 NC_003521.1 + 6052 0.66 0.92458
Target:  5'- uGCCCCAGCGgccccGCAgGGCgUgAUCACg -3'
miRNA:   3'- gUGGGGUUGCa----CGUgUUGgGgUGGUG- -5'
14574 3' -57 NC_003521.1 + 7265 0.69 0.796208
Target:  5'- cUACCCCAaccACGgacGCACuagGCCCC-CUACg -3'
miRNA:   3'- -GUGGGGU---UGCa--CGUGu--UGGGGuGGUG- -5'
14574 3' -57 NC_003521.1 + 8594 0.75 0.506557
Target:  5'- cCACCaCCAacaacagACGccGCACAGCCaCCACCACc -3'
miRNA:   3'- -GUGG-GGU-------UGCa-CGUGUUGG-GGUGGUG- -5'
14574 3' -57 NC_003521.1 + 11369 0.67 0.895505
Target:  5'- cCGCCCaCGccAUGUGUcuacuACAACCCCGUCACc -3'
miRNA:   3'- -GUGGG-GU--UGCACG-----UGUUGGGGUGGUG- -5'
14574 3' -57 NC_003521.1 + 12556 0.7 0.750922
Target:  5'- aACCUCAcCGUGCugGccaaACCgaCCACCACg -3'
miRNA:   3'- gUGGGGUuGCACGugU----UGG--GGUGGUG- -5'
14574 3' -57 NC_003521.1 + 13984 0.66 0.91921
Target:  5'- cCugCCCGGCGcggcggcggGCGagGACCCCAUgGCg -3'
miRNA:   3'- -GugGGGUUGCa--------CGUg-UUGGGGUGgUG- -5'
14574 3' -57 NC_003521.1 + 14424 0.69 0.812559
Target:  5'- uCGCCUaucgugaCGugGUGCACAcgGCCCUGCgGCg -3'
miRNA:   3'- -GUGGG-------GUugCACGUGU--UGGGGUGgUG- -5'
14574 3' -57 NC_003521.1 + 14823 0.67 0.913617
Target:  5'- aCGCCauCCAGa-UGgACGACCCCaACCACu -3'
miRNA:   3'- -GUGG--GGUUgcACgUGUUGGGG-UGGUG- -5'
14574 3' -57 NC_003521.1 + 15151 0.68 0.875453
Target:  5'- gACCCCAACGccuuggugcUGCACcGCUacgaCACCAa -3'
miRNA:   3'- gUGGGGUUGC---------ACGUGuUGGg---GUGGUg -5'
14574 3' -57 NC_003521.1 + 16080 0.71 0.732062
Target:  5'- aGCCCCGACGcGCugGccGCCUgcgucggcgagCACCACg -3'
miRNA:   3'- gUGGGGUUGCaCGugU--UGGG-----------GUGGUG- -5'
14574 3' -57 NC_003521.1 + 16740 0.66 0.929725
Target:  5'- gACCgCCGGCGcGCGCG--CCCGCCGg -3'
miRNA:   3'- gUGG-GGUUGCaCGUGUugGGGUGGUg -5'
14574 3' -57 NC_003521.1 + 16806 0.72 0.634202
Target:  5'- cCGCCCCGACc-GC-CGGgCCCGCCGCu -3'
miRNA:   3'- -GUGGGGUUGcaCGuGUUgGGGUGGUG- -5'
14574 3' -57 NC_003521.1 + 17629 0.67 0.901762
Target:  5'- gACCCCGACGcgcUGCGgAGCUacguaCGCCAg -3'
miRNA:   3'- gUGGGGUUGC---ACGUgUUGGg----GUGGUg -5'
14574 3' -57 NC_003521.1 + 17793 0.67 0.884375
Target:  5'- gGCCgUCGGCGUGCuggccguGCGAccggcggacgacgacCCCCACCGCc -3'
miRNA:   3'- gUGG-GGUUGCACG-------UGUU---------------GGGGUGGUG- -5'
14574 3' -57 NC_003521.1 + 18019 0.71 0.697339
Target:  5'- cCACCaCCGagccgcgcuaccACGUGCAgaaguuccucugcgcCGACCCCACCGa -3'
miRNA:   3'- -GUGG-GGU------------UGCACGU---------------GUUGGGGUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.