miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14574 5' -62.4 NC_003521.1 + 166850 0.66 0.763021
Target:  5'- aUACGCaggCGGuGGCgcGGCGGGCGCa- -3'
miRNA:   3'- gGUGCG---GCCuCCGguUCGUCCGCGgu -5'
14574 5' -62.4 NC_003521.1 + 44089 0.66 0.763021
Target:  5'- gUCAaGCCGGuGGCCcAGCAGauCGUCAa -3'
miRNA:   3'- -GGUgCGGCCuCCGGuUCGUCc-GCGGU- -5'
14574 5' -62.4 NC_003521.1 + 116358 0.66 0.763021
Target:  5'- gCCGC-CCGacGAGGCCGAGCugcuGCuGCCGc -3'
miRNA:   3'- -GGUGcGGC--CUCCGGUUCGuc--CG-CGGU- -5'
14574 5' -62.4 NC_003521.1 + 45052 0.66 0.763021
Target:  5'- gCCGCGCCGcucGuGCCAGGCAacGCGCg- -3'
miRNA:   3'- -GGUGCGGCcu-C-CGGUUCGUc-CGCGgu -5'
14574 5' -62.4 NC_003521.1 + 200480 0.66 0.763021
Target:  5'- -aGCGCCGuGAuccuGGCCAaacuGGCGGcGCGCa- -3'
miRNA:   3'- ggUGCGGC-CU----CCGGU----UCGUC-CGCGgu -5'
14574 5' -62.4 NC_003521.1 + 15310 0.66 0.763021
Target:  5'- aCGCGCgaCGGc-GCCGAGCGGGUGaUCAg -3'
miRNA:   3'- gGUGCG--GCCucCGGUUCGUCCGC-GGU- -5'
14574 5' -62.4 NC_003521.1 + 140847 0.66 0.763021
Target:  5'- aCGUGCUGGAGcGCUucGCggucucggccgAGGCGCCGc -3'
miRNA:   3'- gGUGCGGCCUC-CGGuuCG-----------UCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 57156 0.66 0.763021
Target:  5'- gCCACGCgCGGcAGGUCGu-CGGcGUGCCGc -3'
miRNA:   3'- -GGUGCG-GCC-UCCGGUucGUC-CGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 166169 0.66 0.763021
Target:  5'- -aGCGCa--GGGCCGAGC-GGCGCUc -3'
miRNA:   3'- ggUGCGgccUCCGGUUCGuCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 110452 0.66 0.763021
Target:  5'- --uCGCCGGuGGcGCUGAGCGcgcacGGCGCCu -3'
miRNA:   3'- gguGCGGCC-UC-CGGUUCGU-----CCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 74475 0.66 0.754121
Target:  5'- gCACGUCcuGGGCUucGAGCuGGUGCCGc -3'
miRNA:   3'- gGUGCGGccUCCGG--UUCGuCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 173828 0.66 0.754121
Target:  5'- aCCACGUUcuuGAGGcCCGAGCAcuuGcGUGCCAg -3'
miRNA:   3'- -GGUGCGGc--CUCC-GGUUCGU---C-CGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 96399 0.66 0.754121
Target:  5'- aCCGucCG-CGGuGGCCAA-CAGGCGCUc -3'
miRNA:   3'- -GGU--GCgGCCuCCGGUUcGUCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 53493 0.66 0.754121
Target:  5'- aUCACGUC-GAGGCCGcuGCugcGGCGUCGc -3'
miRNA:   3'- -GGUGCGGcCUCCGGUu-CGu--CCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 238200 0.66 0.754121
Target:  5'- gCCAaGUC-GAGGCCAAGagccuGGGCGUCGg -3'
miRNA:   3'- -GGUgCGGcCUCCGGUUCg----UCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 111752 0.66 0.754121
Target:  5'- gUACGCCGaGGGUCugcgccAGCucaGGGCGCCc -3'
miRNA:   3'- gGUGCGGCcUCCGGu-----UCG---UCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 179234 0.66 0.754121
Target:  5'- uCC-CGCCGcGGGCCuu-CuGGCGCCu -3'
miRNA:   3'- -GGuGCGGCcUCCGGuucGuCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 36187 0.66 0.754121
Target:  5'- cCCACGCaccuGGCCGAGCGGcucaaacgcuGuCGCCAc -3'
miRNA:   3'- -GGUGCGgccuCCGGUUCGUC----------C-GCGGU- -5'
14574 5' -62.4 NC_003521.1 + 180392 0.66 0.754121
Target:  5'- -gGCGCCGGAGuaCugcuGguGGUGCUg -3'
miRNA:   3'- ggUGCGGCCUCcgGuu--CguCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 102921 0.66 0.754121
Target:  5'- gCCACGgguaCGGuuugaGGGCCGAGgcgucgcggucCAGGCGCUc -3'
miRNA:   3'- -GGUGCg---GCC-----UCCGGUUC-----------GUCCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.