miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14574 5' -62.4 NC_003521.1 + 200987 1.09 0.001241
Target:  5'- cCCACGCCGGAGGCCAAGCAGGCGCCAu -3'
miRNA:   3'- -GGUGCGGCCUCCGGUUCGUCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 760 1.09 0.001241
Target:  5'- cCCACGCCGGAGGCCAAGCAGGCGCCAu -3'
miRNA:   3'- -GGUGCGGCCUCCGGUUCGUCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 17420 0.82 0.094725
Target:  5'- gCCGCGCCGGGGcGCCAcacGGCccgcgucgGGGCGCCGc -3'
miRNA:   3'- -GGUGCGGCCUC-CGGU---UCG--------UCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 95559 0.82 0.101987
Target:  5'- gCugGCCGccGAGGCCGAGgAGGCGCCc -3'
miRNA:   3'- gGugCGGC--CUCCGGUUCgUCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 167185 0.8 0.122794
Target:  5'- gCCGCGgCGGAGGCCuucugcuugggcuGGCAGGCGCg- -3'
miRNA:   3'- -GGUGCgGCCUCCGGu------------UCGUCCGCGgu -5'
14574 5' -62.4 NC_003521.1 + 207918 0.79 0.157672
Target:  5'- cCUACGCCGGGGGCggCGGGCAcGGCGgCAg -3'
miRNA:   3'- -GGUGCGGCCUCCG--GUUCGU-CCGCgGU- -5'
14574 5' -62.4 NC_003521.1 + 163080 0.78 0.165334
Target:  5'- gCCACGCC-GAGGCC-GGCccguccucGGGCGCCAg -3'
miRNA:   3'- -GGUGCGGcCUCCGGuUCG--------UCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 28086 0.77 0.204074
Target:  5'- aCgACGgCGGGGaaGCCGAGCAGGCGCUc -3'
miRNA:   3'- -GgUGCgGCCUC--CGGUUCGUCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 177726 0.77 0.204074
Target:  5'- gUACuGCUGGAGGgCGGGCAGcGCGCCGg -3'
miRNA:   3'- gGUG-CGGCCUCCgGUUCGUC-CGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 44064 0.77 0.207874
Target:  5'- gUCGCGCCGGccgGGGCagcagacgguGCAGGCGCCGc -3'
miRNA:   3'- -GGUGCGGCC---UCCGguu-------CGUCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 167659 0.76 0.244889
Target:  5'- uCCGCGCCaGGucgcAGGCCgAGGC-GGCGCCGc -3'
miRNA:   3'- -GGUGCGG-CC----UCCGG-UUCGuCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 91948 0.75 0.250443
Target:  5'- gCCACgGCC-GAGGCCAGGCuGGCGUa- -3'
miRNA:   3'- -GGUG-CGGcCUCCGGUUCGuCCGCGgu -5'
14574 5' -62.4 NC_003521.1 + 115822 0.75 0.250443
Target:  5'- -gGCGCgGGuGGCUcAGCAGGCGCUg -3'
miRNA:   3'- ggUGCGgCCuCCGGuUCGUCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 102793 0.75 0.261861
Target:  5'- aCGCGCCGGcGGCCGccAGCucGGGCGgCAg -3'
miRNA:   3'- gGUGCGGCCuCCGGU--UCG--UCCGCgGU- -5'
14574 5' -62.4 NC_003521.1 + 211106 0.75 0.261861
Target:  5'- gUCGCGCC-GAGGCuCAgcAGcCAGGCGCCGa -3'
miRNA:   3'- -GGUGCGGcCUCCG-GU--UC-GUCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 169422 0.75 0.267728
Target:  5'- gCACGCCGuAGGCC-AGCAGGCGguCCu -3'
miRNA:   3'- gGUGCGGCcUCCGGuUCGUCCGC--GGu -5'
14574 5' -62.4 NC_003521.1 + 229277 0.75 0.273699
Target:  5'- aCgGCGCCGGAGGCguAGCGauaggacuGGCGCa- -3'
miRNA:   3'- -GgUGCGGCCUCCGguUCGU--------CCGCGgu -5'
14574 5' -62.4 NC_003521.1 + 44266 0.75 0.273699
Target:  5'- gUCACGCCGGAGGagaUcAGCgugcaccuGGGCGCCGa -3'
miRNA:   3'- -GGUGCGGCCUCCg--GuUCG--------UCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 152346 0.75 0.279778
Target:  5'- cCCGCGCCGacgcugcucuGGGGCCGgccggGGCGGcGCGCCc -3'
miRNA:   3'- -GGUGCGGC----------CUCCGGU-----UCGUC-CGCGGu -5'
14574 5' -62.4 NC_003521.1 + 168670 0.74 0.292256
Target:  5'- aCgGCGCCGGAGGUCccugguGGCAGGcCGUCc -3'
miRNA:   3'- -GgUGCGGCCUCCGGu-----UCGUCC-GCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.