miRNA display CGI


Results 21 - 40 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14574 5' -62.4 NC_003521.1 + 179234 0.66 0.754121
Target:  5'- uCC-CGCCGcGGGCCuu-CuGGCGCCu -3'
miRNA:   3'- -GGuGCGGCcUCCGGuucGuCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 233430 0.66 0.754121
Target:  5'- -uGCGUgGGuuuguGGCCGGGCAgGGCGUa- -3'
miRNA:   3'- ggUGCGgCCu----CCGGUUCGU-CCGCGgu -5'
14574 5' -62.4 NC_003521.1 + 111752 0.66 0.754121
Target:  5'- gUACGCCGaGGGUCugcgccAGCucaGGGCGCCc -3'
miRNA:   3'- gGUGCGGCcUCCGGu-----UCG---UCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 36187 0.66 0.754121
Target:  5'- cCCACGCaccuGGCCGAGCGGcucaaacgcuGuCGCCAc -3'
miRNA:   3'- -GGUGCGgccuCCGGUUCGUC----------C-GCGGU- -5'
14574 5' -62.4 NC_003521.1 + 180392 0.66 0.754121
Target:  5'- -gGCGCCGGAGuaCugcuGguGGUGCUg -3'
miRNA:   3'- ggUGCGGCCUCcgGuu--CguCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 73551 0.66 0.754121
Target:  5'- aUCACGCUcaaccaccuGGCCGugguGCGGGCGCUg -3'
miRNA:   3'- -GGUGCGGccu------CCGGUu---CGUCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 96399 0.66 0.754121
Target:  5'- aCCGucCG-CGGuGGCCAA-CAGGCGCUc -3'
miRNA:   3'- -GGU--GCgGCCuCCGGUUcGUCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 143541 0.66 0.754121
Target:  5'- gCGCGCCGccGGCgaCGAGCAGcagcCGCCAu -3'
miRNA:   3'- gGUGCGGCcuCCG--GUUCGUCc---GCGGU- -5'
14574 5' -62.4 NC_003521.1 + 238200 0.66 0.754121
Target:  5'- gCCAaGUC-GAGGCCAAGagccuGGGCGUCGg -3'
miRNA:   3'- -GGUgCGGcCUCCGGUUCg----UCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 133749 0.66 0.753226
Target:  5'- gCugGCCGGcAGGCCcGGCgauuccgGGGaCGCg- -3'
miRNA:   3'- gGugCGGCC-UCCGGuUCG-------UCC-GCGgu -5'
14574 5' -62.4 NC_003521.1 + 211587 0.66 0.753226
Target:  5'- gCCGCgGCUGGAGGCCcAGUAGaggaucuccaugaGCuCCAg -3'
miRNA:   3'- -GGUG-CGGCCUCCGGuUCGUC-------------CGcGGU- -5'
14574 5' -62.4 NC_003521.1 + 129794 0.66 0.753226
Target:  5'- gCGCGCC-GAGGCCGAccGCGucaaguuGGUGCUg -3'
miRNA:   3'- gGUGCGGcCUCCGGUU--CGU-------CCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 101754 0.66 0.753226
Target:  5'- uCCA-GCCccGAGGCCAGGguGaucugcgGCGCCGu -3'
miRNA:   3'- -GGUgCGGc-CUCCGGUUCguC-------CGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 78887 0.66 0.748735
Target:  5'- gCGCGUCaGGGGGuCCAcGCGGGCcucguagacggggaaGCCGc -3'
miRNA:   3'- gGUGCGG-CCUCC-GGUuCGUCCG---------------CGGU- -5'
14574 5' -62.4 NC_003521.1 + 36800 0.66 0.748735
Target:  5'- aCGCGCCuuucgGGcAGGCCGugaucacgcgccacgGGCcGGCGCUg -3'
miRNA:   3'- gGUGCGG-----CC-UCCGGU---------------UCGuCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 70721 0.66 0.746031
Target:  5'- cCUGCGCCGGAuguaccGGCacuucguccagcuGCAGcGCGCCGc -3'
miRNA:   3'- -GGUGCGGCCU------CCGguu----------CGUC-CGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 157042 0.66 0.745127
Target:  5'- gCGCgGUCGGAGGagcgCGgcGGgGGGCGCCGc -3'
miRNA:   3'- gGUG-CGGCCUCCg---GU--UCgUCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 132380 0.66 0.745127
Target:  5'- gCACGCCGcacacccgcGAGGUCAuccGGCAGaCGCUg -3'
miRNA:   3'- gGUGCGGC---------CUCCGGU---UCGUCcGCGGu -5'
14574 5' -62.4 NC_003521.1 + 61705 0.66 0.745127
Target:  5'- aCCGCGgCGGAGGUCAuGCAccuaCGCUg -3'
miRNA:   3'- -GGUGCgGCCUCCGGUuCGUcc--GCGGu -5'
14574 5' -62.4 NC_003521.1 + 99182 0.66 0.745127
Target:  5'- uCCG-GCCuGGGGGCUgAAGguGGCGgCGg -3'
miRNA:   3'- -GGUgCGG-CCUCCGG-UUCguCCGCgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.