miRNA display CGI


Results 1 - 20 of 365 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14574 5' -62.4 NC_003521.1 + 38993 0.73 0.353754
Target:  5'- aCCACccaagguagguGUC-GAGGCCgGAGCGGGCGCCGc -3'
miRNA:   3'- -GGUG-----------CGGcCUCCGG-UUCGUCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 44377 0.74 0.305165
Target:  5'- cCCACGCCcGAGGCCGAGguG-CGUUAu -3'
miRNA:   3'- -GGUGCGGcCUCCGGUUCguCcGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 135325 0.74 0.318506
Target:  5'- aCAgGCCGG-GGUCGGGCGGGuUGCCu -3'
miRNA:   3'- gGUgCGGCCuCCGGUUCGUCC-GCGGu -5'
14574 5' -62.4 NC_003521.1 + 226849 0.74 0.32534
Target:  5'- gCCGCGCCGGgcAGGCCcaucaGGGCGuCCAg -3'
miRNA:   3'- -GGUGCGGCC--UCCGGuucg-UCCGC-GGU- -5'
14574 5' -62.4 NC_003521.1 + 102345 0.73 0.339331
Target:  5'- gCCgACGCCGGGguGGC--GGCAGGCGCUc -3'
miRNA:   3'- -GG-UGCGGCCU--CCGguUCGUCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 73136 0.73 0.339331
Target:  5'- gCACGgCGGGGGCagcGGCGgcGGCGCCGc -3'
miRNA:   3'- gGUGCgGCCUCCGgu-UCGU--CCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 136085 0.73 0.339331
Target:  5'- uCCACGCUGGAGGgCucGguGuGCGUCAa -3'
miRNA:   3'- -GGUGCGGCCUCCgGuuCguC-CGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 111194 0.73 0.346489
Target:  5'- gCCGCGgaCGGuGGGCUggGCGauGGCGCCGg -3'
miRNA:   3'- -GGUGCg-GCC-UCCGGuuCGU--CCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 39423 0.73 0.353023
Target:  5'- -gGCGCCGaGAaaaugccgcugccGGCCGAGCccGGCGCCGa -3'
miRNA:   3'- ggUGCGGC-CU-------------CCGGUUCGu-CCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 65092 0.74 0.298656
Target:  5'- aCCgGCGCCaGGAGGaaGAGC-GGCGCCGa -3'
miRNA:   3'- -GG-UGCGG-CCUCCggUUCGuCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 168670 0.74 0.292256
Target:  5'- aCgGCGCCGGAGGUCccugguGGCAGGcCGUCc -3'
miRNA:   3'- -GgUGCGGCCUCCGGu-----UCGUCC-GCGGu -5'
14574 5' -62.4 NC_003521.1 + 152346 0.75 0.279778
Target:  5'- cCCGCGCCGacgcugcucuGGGGCCGgccggGGCGGcGCGCCc -3'
miRNA:   3'- -GGUGCGGC----------CUCCGGU-----UCGUC-CGCGGu -5'
14574 5' -62.4 NC_003521.1 + 163080 0.78 0.165334
Target:  5'- gCCACGCC-GAGGCC-GGCccguccucGGGCGCCAg -3'
miRNA:   3'- -GGUGCGGcCUCCGGuUCG--------UCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 28086 0.77 0.204074
Target:  5'- aCgACGgCGGGGaaGCCGAGCAGGCGCUc -3'
miRNA:   3'- -GgUGCgGCCUC--CGGUUCGUCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 115822 0.75 0.250443
Target:  5'- -gGCGCgGGuGGCUcAGCAGGCGCUg -3'
miRNA:   3'- ggUGCGgCCuCCGGuUCGUCCGCGGu -5'
14574 5' -62.4 NC_003521.1 + 211106 0.75 0.261861
Target:  5'- gUCGCGCC-GAGGCuCAgcAGcCAGGCGCCGa -3'
miRNA:   3'- -GGUGCGGcCUCCG-GU--UC-GUCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 102793 0.75 0.261861
Target:  5'- aCGCGCCGGcGGCCGccAGCucGGGCGgCAg -3'
miRNA:   3'- gGUGCGGCCuCCGGU--UCG--UCCGCgGU- -5'
14574 5' -62.4 NC_003521.1 + 169422 0.75 0.267728
Target:  5'- gCACGCCGuAGGCC-AGCAGGCGguCCu -3'
miRNA:   3'- gGUGCGGCcUCCGGuUCGUCCGC--GGu -5'
14574 5' -62.4 NC_003521.1 + 44266 0.75 0.273699
Target:  5'- gUCACGCCGGAGGagaUcAGCgugcaccuGGGCGCCGa -3'
miRNA:   3'- -GGUGCGGCCUCCg--GuUCG--------UCCGCGGU- -5'
14574 5' -62.4 NC_003521.1 + 229277 0.75 0.273699
Target:  5'- aCgGCGCCGGAGGCguAGCGauaggacuGGCGCa- -3'
miRNA:   3'- -GgUGCGGCCUCCGguUCGU--------CCGCGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.