miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 157250 0.66 0.987415
Target:  5'- cGGCUGac-UACCAAGCuCAucgacgucaaccuggUGGGCcCCg -3'
miRNA:   3'- -UCGACcuuAUGGUUCG-GU---------------ACCCGuGG- -5'
14575 3' -53.7 NC_003521.1 + 136615 0.66 0.986793
Target:  5'- cGCUGGGcUGCagCAgcacguaaucGGCCAcGGGCGCg -3'
miRNA:   3'- uCGACCUuAUG--GU----------UCGGUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 38455 0.66 0.986793
Target:  5'- uGCUGGAGcagGUCGgcGGCCGUGGGacguugACCa -3'
miRNA:   3'- uCGACCUUa--UGGU--UCGGUACCCg-----UGG- -5'
14575 3' -53.7 NC_003521.1 + 36685 0.66 0.986793
Target:  5'- gAGCUGag--GCCGGGCUcc-GGCGCCu -3'
miRNA:   3'- -UCGACcuuaUGGUUCGGuacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 88622 0.66 0.986793
Target:  5'- cGGUgaaGGAcgACC-GGCUGUGGGUGCa -3'
miRNA:   3'- -UCGa--CCUuaUGGuUCGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 20280 0.66 0.986793
Target:  5'- cAGC-GGAGUgcgguggaucucGCCGGcGCCAUGcaGCACCa -3'
miRNA:   3'- -UCGaCCUUA------------UGGUU-CGGUACc-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 48894 0.66 0.986793
Target:  5'- cGCUGc----CCAGGCCccGGGgACCa -3'
miRNA:   3'- uCGACcuuauGGUUCGGuaCCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 28090 0.66 0.986793
Target:  5'- cGGCgGGGAaGCCGAGCa---GGCGCUc -3'
miRNA:   3'- -UCGaCCUUaUGGUUCGguacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 101779 0.66 0.986793
Target:  5'- cAGCaGGu-UGCgCAGGUCAguUGGGCGCg -3'
miRNA:   3'- -UCGaCCuuAUG-GUUCGGU--ACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 66315 0.66 0.986793
Target:  5'- cGgaGGugauCCAAGCCGUGGaggcCGCCu -3'
miRNA:   3'- uCgaCCuuauGGUUCGGUACCc---GUGG- -5'
14575 3' -53.7 NC_003521.1 + 238682 0.66 0.986793
Target:  5'- uGCUGGAGcagGUCGgcGGCCGUGGGacguugACCa -3'
miRNA:   3'- uCGACCUUa--UGGU--UCGGUACCCg-----UGG- -5'
14575 3' -53.7 NC_003521.1 + 212150 0.66 0.986634
Target:  5'- cGGCguaggucgGGAaccagagGUGCgAGGUUagGGGCACCa -3'
miRNA:   3'- -UCGa-------CCU-------UAUGgUUCGGuaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 190976 0.66 0.986311
Target:  5'- uGCUGGAcgagGCCGAGCggcagCAggcgcagguggacgUGGGCAgCCu -3'
miRNA:   3'- uCGACCUua--UGGUUCG-----GU--------------ACCCGU-GG- -5'
14575 3' -53.7 NC_003521.1 + 103130 0.66 0.985135
Target:  5'- aGGCUGGuggggaGAGCCcagGGGCAgCa -3'
miRNA:   3'- -UCGACCuuauggUUCGGua-CCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 4306 0.66 0.985135
Target:  5'- aGGCagagGGAcgGCCGGGggcucgaccguCCAUGccuGGCGCCa -3'
miRNA:   3'- -UCGa---CCUuaUGGUUC-----------GGUAC---CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 112063 0.66 0.985135
Target:  5'- uGCUGGAGgacGCC--GCgGUGGGgAUCa -3'
miRNA:   3'- uCGACCUUa--UGGuuCGgUACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 30436 0.66 0.985135
Target:  5'- cAGCUGaacAUGuCCAggcGGCCGaGGGUGCCg -3'
miRNA:   3'- -UCGACcu-UAU-GGU---UCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 72078 0.66 0.985135
Target:  5'- aGGC-GGAccACCAGGCCGUGcugacCGCCg -3'
miRNA:   3'- -UCGaCCUuaUGGUUCGGUACcc---GUGG- -5'
14575 3' -53.7 NC_003521.1 + 225687 0.66 0.985135
Target:  5'- cGUUGGggU-CCAGGCgCucccaGGCGCCc -3'
miRNA:   3'- uCGACCuuAuGGUUCG-Guac--CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 1211 0.66 0.985135
Target:  5'- cAGCUG---UACCuGGCCcUGGGCGUCa -3'
miRNA:   3'- -UCGACcuuAUGGuUCGGuACCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.