Results 21 - 40 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 35043 | 0.66 | 0.983322 |
Target: 5'- cAGCUGGAccgucgguugGUACUuccagcGGGCCAUGcGGgACg -3' miRNA: 3'- -UCGACCU----------UAUGG------UUCGGUAC-CCgUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 1211 | 0.66 | 0.985135 |
Target: 5'- cAGCUG---UACCuGGCCcUGGGCGUCa -3' miRNA: 3'- -UCGACcuuAUGGuUCGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 225687 | 0.66 | 0.985135 |
Target: 5'- cGUUGGggU-CCAGGCgCucccaGGCGCCc -3' miRNA: 3'- uCGACCuuAuGGUUCG-Guac--CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 212150 | 0.66 | 0.986634 |
Target: 5'- cGGCguaggucgGGAaccagagGUGCgAGGUUagGGGCACCa -3' miRNA: 3'- -UCGa-------CCU-------UAUGgUUCGGuaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 38466 | 0.66 | 0.983322 |
Target: 5'- cGuCUGG---GCUcuGGCgGUGGGCGCCg -3' miRNA: 3'- uC-GACCuuaUGGu-UCGgUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 66315 | 0.66 | 0.986793 |
Target: 5'- cGgaGGugauCCAAGCCGUGGaggcCGCCu -3' miRNA: 3'- uCgaCCuuauGGUUCGGUACCc---GUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 238682 | 0.66 | 0.986793 |
Target: 5'- uGCUGGAGcagGUCGgcGGCCGUGGGacguugACCa -3' miRNA: 3'- uCGACCUUa--UGGU--UCGGUACCCg-----UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 136117 | 0.66 | 0.983322 |
Target: 5'- gGGaCUGGuGUACgAGGCgcucuacccCGUGGcGCGCCg -3' miRNA: 3'- -UC-GACCuUAUGgUUCG---------GUACC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 112063 | 0.66 | 0.985135 |
Target: 5'- uGCUGGAGgacGCC--GCgGUGGGgAUCa -3' miRNA: 3'- uCGACCUUa--UGGuuCGgUACCCgUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 28090 | 0.66 | 0.986793 |
Target: 5'- cGGCgGGGAaGCCGAGCa---GGCGCUc -3' miRNA: 3'- -UCGaCCUUaUGGUUCGguacCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 238008 | 0.66 | 0.983132 |
Target: 5'- cGGCUGGGucGCCAGucuucgucaucgcGUCGUaGGGC-CCg -3' miRNA: 3'- -UCGACCUuaUGGUU-------------CGGUA-CCCGuGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 101779 | 0.66 | 0.986793 |
Target: 5'- cAGCaGGu-UGCgCAGGUCAguUGGGCGCg -3' miRNA: 3'- -UCGaCCuuAUG-GUUCGGU--ACCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 72078 | 0.66 | 0.985135 |
Target: 5'- aGGC-GGAccACCAGGCCGUGcugacCGCCg -3' miRNA: 3'- -UCGaCCUuaUGGUUCGGUACcc---GUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 14201 | 0.66 | 0.983132 |
Target: 5'- aAGCUGGuGUGCUgcggcgagccccuGAcGCCGcUGGGCuacGCCg -3' miRNA: 3'- -UCGACCuUAUGG-------------UU-CGGU-ACCCG---UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 18646 | 0.66 | 0.979203 |
Target: 5'- uGGCgUGGG--GCCGcacggaccugcuGGCCAcggGGGCGCUg -3' miRNA: 3'- -UCG-ACCUuaUGGU------------UCGGUa--CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 190976 | 0.66 | 0.986311 |
Target: 5'- uGCUGGAcgagGCCGAGCggcagCAggcgcagguggacgUGGGCAgCCu -3' miRNA: 3'- uCGACCUua--UGGUUCG-----GU--------------ACCCGU-GG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 185336 | 0.66 | 0.981347 |
Target: 5'- uGGCUGGAGcACCAGGaggaCGgcaagGcGGCGCa -3' miRNA: 3'- -UCGACCUUaUGGUUCg---GUa----C-CCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 185124 | 0.66 | 0.981552 |
Target: 5'- uGCUGGAGcacgggaugcgcaacUGCCAguuccucucgguggGGCCcgacgacgagGUGGcGCACCu -3' miRNA: 3'- uCGACCUU---------------AUGGU--------------UCGG----------UACC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 38455 | 0.66 | 0.986793 |
Target: 5'- uGCUGGAGcagGUCGgcGGCCGUGGGacguugACCa -3' miRNA: 3'- uCGACCUUa--UGGU--UCGGUACCCg-----UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 88622 | 0.66 | 0.986793 |
Target: 5'- cGGUgaaGGAcgACC-GGCUGUGGGUGCa -3' miRNA: 3'- -UCGa--CCUuaUGGuUCGGUACCCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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