miRNA display CGI


Results 41 - 60 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 136117 0.66 0.983322
Target:  5'- gGGaCUGGuGUACgAGGCgcucuacccCGUGGcGCGCCg -3'
miRNA:   3'- -UC-GACCuUAUGgUUCG---------GUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 181904 0.67 0.971673
Target:  5'- --gUGGuAUACCAGGUCA-GGGCucCCa -3'
miRNA:   3'- ucgACCuUAUGGUUCGGUaCCCGu-GG- -5'
14575 3' -53.7 NC_003521.1 + 113741 0.67 0.962356
Target:  5'- gGGCUGGGccGCCucucgucgguGGCCcUGcccGGCACCg -3'
miRNA:   3'- -UCGACCUuaUGGu---------UCGGuAC---CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 91189 0.67 0.962356
Target:  5'- -uCUGGAagcgGUACCGcgggcgcGUCGUGGGCACa -3'
miRNA:   3'- ucGACCU----UAUGGUu------CGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 224586 0.67 0.964699
Target:  5'- aGGCUGaGGUacauuucgcacucgGCCAGGCgGcaGGGCGCCg -3'
miRNA:   3'- -UCGACcUUA--------------UGGUUCGgUa-CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 66012 0.67 0.96567
Target:  5'- uGCUGGAGaACC---CCguGUGGGCGCUg -3'
miRNA:   3'- uCGACCUUaUGGuucGG--UACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 144115 0.67 0.96567
Target:  5'- uGCUGGAccGCCGcGGCCuggacgaGGuGCGCCu -3'
miRNA:   3'- uCGACCUuaUGGU-UCGGua-----CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 223775 0.67 0.96567
Target:  5'- cGCUGucggcGCCGuuaccGCCGUGGGcCGCCa -3'
miRNA:   3'- uCGACcuua-UGGUu----CGGUACCC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 83217 0.67 0.96567
Target:  5'- cGCUGGggUACaCGGuGCCcucGGcGCACUu -3'
miRNA:   3'- uCGACCuuAUG-GUU-CGGua-CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 113846 0.67 0.968774
Target:  5'- uGCUGGggUuucuuCCGAGC-GUGGcggugguguaaGCGCCg -3'
miRNA:   3'- uCGACCuuAu----GGUUCGgUACC-----------CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 131853 0.67 0.972776
Target:  5'- gGGCUGGuucaaggcgGCCAcGGCCAUcgugccgcgcgugucGGGCAgCg -3'
miRNA:   3'- -UCGACCuua------UGGU-UCGGUA---------------CCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 119624 0.67 0.974372
Target:  5'- cAGgUGGAcguuUACCcacuGGCCGcGGGCGuCCg -3'
miRNA:   3'- -UCgACCUu---AUGGu---UCGGUaCCCGU-GG- -5'
14575 3' -53.7 NC_003521.1 + 152273 0.67 0.971673
Target:  5'- cAGCUGGugcccUGCCccgaggAGGCCGUuucGGuGCGCCu -3'
miRNA:   3'- -UCGACCuu---AUGG------UUCGGUA---CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 8349 0.67 0.971673
Target:  5'- aAGCUGGggUAgCGcucgcAGCCAgagaagaaaaacUGGGUgguCCa -3'
miRNA:   3'- -UCGACCuuAUgGU-----UCGGU------------ACCCGu--GG- -5'
14575 3' -53.7 NC_003521.1 + 87076 0.67 0.971673
Target:  5'- gGGCuguacgUGGAuUGgUggGCCAcggUGGGCAUCg -3'
miRNA:   3'- -UCG------ACCUuAUgGuuCGGU---ACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 210407 0.67 0.971673
Target:  5'- cAGCUGGG--ACCGcAGCguggucggCGUGGGCGgCg -3'
miRNA:   3'- -UCGACCUuaUGGU-UCG--------GUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 184173 0.67 0.974372
Target:  5'- gAGCgGGAGgugcACCGGcCCGUGGuGCGCUu -3'
miRNA:   3'- -UCGaCCUUa---UGGUUcGGUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 174213 0.67 0.97688
Target:  5'- cGUUGGggUcGCgCGGGUCGggcagGGGCGCg -3'
miRNA:   3'- uCGACCuuA-UG-GUUCGGUa----CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 223390 0.67 0.974372
Target:  5'- cGGCgccccgACgCGGGCCGUGuGGCGCCc -3'
miRNA:   3'- -UCGaccuuaUG-GUUCGGUAC-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 198248 0.67 0.974111
Target:  5'- uAGCUGGcuGAcGCCGcagcgauAGCCGUcccaGcGGCACCa -3'
miRNA:   3'- -UCGACC--UUaUGGU-------UCGGUA----C-CCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.