miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 78395 0.68 0.946892
Target:  5'- cGGaCUGGAA-ACCGaaAGCgCGUGGGaGCCa -3'
miRNA:   3'- -UC-GACCUUaUGGU--UCG-GUACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 170094 0.68 0.946892
Target:  5'- cAGCUGGAcgaaGUGCCGguacauccGGCgCA--GGCGCCg -3'
miRNA:   3'- -UCGACCU----UAUGGU--------UCG-GUacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 27398 0.68 0.951097
Target:  5'- cGCUGGGAgACCAucuGCuCGcGGGUGCUg -3'
miRNA:   3'- uCGACCUUaUGGUu--CG-GUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 216878 0.68 0.946892
Target:  5'- gAGCgGGAcauCCAGGCCAUccaGGcCACCa -3'
miRNA:   3'- -UCGaCCUuauGGUUCGGUAc--CC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 234758 0.68 0.946892
Target:  5'- cGGCUGGcGUgaucacgcccuGCgGGGCCGcugGGGCACg -3'
miRNA:   3'- -UCGACCuUA-----------UGgUUCGGUa--CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 226378 0.68 0.958825
Target:  5'- cGGCUGacgccGCCGcagGGCCGUGuGCACCa -3'
miRNA:   3'- -UCGACcuua-UGGU---UCGGUACcCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 239631 0.68 0.958825
Target:  5'- cAGCUGGuccuguugGCaCAGGCCGUccagucccguagGcGGCGCCg -3'
miRNA:   3'- -UCGACCuua-----UG-GUUCGGUA------------C-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 225068 0.68 0.958825
Target:  5'- uAGCUcGGGcAUGCUgcuGCCcgGGcGCACCu -3'
miRNA:   3'- -UCGA-CCU-UAUGGuu-CGGuaCC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 121902 0.68 0.958825
Target:  5'- uGGCUGGGGcagaugGCCcGGCCcGUGGGguugugcacguuCACCg -3'
miRNA:   3'- -UCGACCUUa-----UGGuUCGG-UACCC------------GUGG- -5'
14575 3' -53.7 NC_003521.1 + 64319 0.68 0.953905
Target:  5'- cGCUGGccauGGUacacgagcagaugaGCCAgcugcaGGCCcUGGGCGCCc -3'
miRNA:   3'- uCGACC----UUA--------------UGGU------UCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 114038 0.68 0.958825
Target:  5'- gAGCUGGAccacGCgCAGcGCCA-GGGCcuGCCg -3'
miRNA:   3'- -UCGACCUua--UG-GUU-CGGUaCCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 39404 0.68 0.958825
Target:  5'- cAGCUGGuccuguugGCaCAGGCCGUccagucccguagGcGGCGCCg -3'
miRNA:   3'- -UCGACCuua-----UG-GUUCGGUA------------C-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 187058 0.68 0.958825
Target:  5'- gGGCgGGAaggGUGCCAgcgAGCgGaGGGCGCg -3'
miRNA:   3'- -UCGaCCU---UAUGGU---UCGgUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 37704 0.68 0.951097
Target:  5'- cGGCUcgcaGAGUGCCuuuGGCCAgGcGGCGCUg -3'
miRNA:   3'- -UCGAc---CUUAUGGu--UCGGUaC-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 53954 0.68 0.946892
Target:  5'- gAGCUGGGccgaCGAGCCGUGcuGCACg -3'
miRNA:   3'- -UCGACCUuaugGUUCGGUACc-CGUGg -5'
14575 3' -53.7 NC_003521.1 + 114589 0.68 0.952715
Target:  5'- gGGCgUGGAccugacuaucaagauGUGgUucGUCAUGGGCGCCc -3'
miRNA:   3'- -UCG-ACCU---------------UAUgGuuCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 24822 0.68 0.945145
Target:  5'- uGCUGGugggcuucuacACCA--CCAUGGGCAUCa -3'
miRNA:   3'- uCGACCuua--------UGGUucGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 215559 0.68 0.951097
Target:  5'- -aCUGGuacACCAGGCCAgGGaccGCGCCg -3'
miRNA:   3'- ucGACCuuaUGGUUCGGUaCC---CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 134590 0.68 0.951097
Target:  5'- aGGCUGaGGAUGgaGacGGCCAUGuGCGCCg -3'
miRNA:   3'- -UCGAC-CUUAUggU--UCGGUACcCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 120722 0.68 0.951097
Target:  5'- uGGCccUGGA---CCGuGGCCAccagGGGCACCa -3'
miRNA:   3'- -UCG--ACCUuauGGU-UCGGUa---CCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.