Results 101 - 120 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 118697 | 0.68 | 0.942455 |
Target: 5'- cGCUGGuggagGgCAGGCuCAUGGGCGa- -3' miRNA: 3'- uCGACCuua--UgGUUCG-GUACCCGUgg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 178674 | 0.68 | 0.942455 |
Target: 5'- cGCUGGAAcACCGgguggucgcGGCCGcucaGGUACCa -3' miRNA: 3'- uCGACCUUaUGGU---------UCGGUac--CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 227583 | 0.68 | 0.946892 |
Target: 5'- uAGgaGGAcggaugaggcAUGgCAGGCU-UGGGCGCCg -3' miRNA: 3'- -UCgaCCU----------UAUgGUUCGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 79057 | 0.68 | 0.946892 |
Target: 5'- uGGCguagGGggU-CCGGGgCucGGGCACCa -3' miRNA: 3'- -UCGa---CCuuAuGGUUCgGuaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 145033 | 0.69 | 0.932877 |
Target: 5'- cGCUGGAucGCguGGCCGaGcGGCACg -3' miRNA: 3'- uCGACCUuaUGguUCGGUaC-CCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 427 | 0.69 | 0.916733 |
Target: 5'- uGCUGGcgagGCCAAGCCGgcGGUaaGCCa -3' miRNA: 3'- uCGACCuua-UGGUUCGGUacCCG--UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 30949 | 0.69 | 0.916733 |
Target: 5'- cGUaGGuAGUGCCAAGCCA--GGCGCUc -3' miRNA: 3'- uCGaCC-UUAUGGUUCGGUacCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 99318 | 0.69 | 0.937784 |
Target: 5'- aGGUccgGGAcgaGgCGGGCCAggUGGGCACCu -3' miRNA: 3'- -UCGa--CCUua-UgGUUCGGU--ACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 148713 | 0.69 | 0.922352 |
Target: 5'- cGCacccgGGggUuCCGA-CCcgGGGCACCg -3' miRNA: 3'- uCGa----CCuuAuGGUUcGGuaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 212284 | 0.69 | 0.922352 |
Target: 5'- aGGCUGGccaggGCgaAGGCCGgcaUGGGCACg -3' miRNA: 3'- -UCGACCuua--UGg-UUCGGU---ACCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 149441 | 0.69 | 0.922352 |
Target: 5'- gGGUcgGGggU-CCGGGCCcgGGGUucgGCCc -3' miRNA: 3'- -UCGa-CCuuAuGGUUCGGuaCCCG---UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 166226 | 0.69 | 0.937784 |
Target: 5'- cAGCUGGuagaagagcguGAUGCCGcccggcgagcgGGCCGUgcucacGGGCACg -3' miRNA: 3'- -UCGACC-----------UUAUGGU-----------UCGGUA------CCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 167374 | 0.69 | 0.937784 |
Target: 5'- uGCUGGGuacagAUAUCGAGCgAcgcGGGCACg -3' miRNA: 3'- uCGACCU-----UAUGGUUCGgUa--CCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 26289 | 0.69 | 0.932877 |
Target: 5'- uGCUGG--UGCUggGCaucuuggaGGGCACCg -3' miRNA: 3'- uCGACCuuAUGGuuCGgua-----CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 40749 | 0.69 | 0.916733 |
Target: 5'- uGCUGGcgagGCCAAGCCGgcGGUaaGCCa -3' miRNA: 3'- uCGACCuua-UGGUUCGGUacCCG--UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 93049 | 0.69 | 0.927205 |
Target: 5'- cGCUGGGcuucaacACCGuggugguGGCCAUGGGC-CUg -3' miRNA: 3'- uCGACCUua-----UGGU-------UCGGUACCCGuGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 171301 | 0.69 | 0.927733 |
Target: 5'- gGGCUGGAaggcgGUGCUggGCCucaacgcGGccuGCGCCg -3' miRNA: 3'- -UCGACCU-----UAUGGuuCGGua-----CC---CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 88212 | 0.69 | 0.937784 |
Target: 5'- cGcCUGGug-ACCAA-CCA-GGGCGCCg -3' miRNA: 3'- uC-GACCuuaUGGUUcGGUaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 59351 | 0.69 | 0.937784 |
Target: 5'- gAGCUGGGAUG---GGCCGUcuGCGCCg -3' miRNA: 3'- -UCGACCUUAUgguUCGGUAccCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 129017 | 0.69 | 0.932877 |
Target: 5'- cGCUGGc--GCC--GCCAgaGGGCACCc -3' miRNA: 3'- uCGACCuuaUGGuuCGGUa-CCCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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