Results 81 - 100 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 79057 | 0.68 | 0.946892 |
Target: 5'- uGGCguagGGggU-CCGGGgCucGGGCACCa -3' miRNA: 3'- -UCGa---CCuuAuGGUUCgGuaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 227583 | 0.68 | 0.946892 |
Target: 5'- uAGgaGGAcggaugaggcAUGgCAGGCU-UGGGCGCCg -3' miRNA: 3'- -UCgaCCU----------UAUgGUUCGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 121368 | 0.68 | 0.942455 |
Target: 5'- cGGCUuGAugACCAGGCUcuUGGGgGCCa -3' miRNA: 3'- -UCGAcCUuaUGGUUCGGu-ACCCgUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 178674 | 0.68 | 0.942455 |
Target: 5'- cGCUGGAAcACCGgguggucgcGGCCGcucaGGUACCa -3' miRNA: 3'- uCGACCUUaUGGU---------UCGGUac--CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 118697 | 0.68 | 0.942455 |
Target: 5'- cGCUGGuggagGgCAGGCuCAUGGGCGa- -3' miRNA: 3'- uCGACCuua--UgGUUCG-GUACCCGUgg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 97745 | 0.68 | 0.942455 |
Target: 5'- cGGCUGcGAAU-CCGAcguaucGCCAccGGCGCCa -3' miRNA: 3'- -UCGAC-CUUAuGGUU------CGGUacCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 24822 | 0.68 | 0.945145 |
Target: 5'- uGCUGGugggcuucuacACCA--CCAUGGGCAUCa -3' miRNA: 3'- uCGACCuua--------UGGUucGGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 130405 | 0.68 | 0.958825 |
Target: 5'- uGCUGGAGUugCAgaagcucuggcuGGgCGUGGaGUAUCa -3' miRNA: 3'- uCGACCUUAugGU------------UCgGUACC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 150513 | 0.68 | 0.946892 |
Target: 5'- cGGCgGGGcccUGCUaggagcggGAGCCGUGGGguCCg -3' miRNA: 3'- -UCGaCCUu--AUGG--------UUCGGUACCCguGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 226378 | 0.68 | 0.958825 |
Target: 5'- cGGCUGacgccGCCGcagGGCCGUGuGCACCa -3' miRNA: 3'- -UCGACcuua-UGGU---UCGGUACcCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 239631 | 0.68 | 0.958825 |
Target: 5'- cAGCUGGuccuguugGCaCAGGCCGUccagucccguagGcGGCGCCg -3' miRNA: 3'- -UCGACCuua-----UG-GUUCGGUA------------C-CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 225068 | 0.68 | 0.958825 |
Target: 5'- uAGCUcGGGcAUGCUgcuGCCcgGGcGCACCu -3' miRNA: 3'- -UCGA-CCU-UAUGGuu-CGGuaCC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 121902 | 0.68 | 0.958825 |
Target: 5'- uGGCUGGGGcagaugGCCcGGCCcGUGGGguugugcacguuCACCg -3' miRNA: 3'- -UCGACCUUa-----UGGuUCGG-UACCC------------GUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 64319 | 0.68 | 0.953905 |
Target: 5'- cGCUGGccauGGUacacgagcagaugaGCCAgcugcaGGCCcUGGGCGCCc -3' miRNA: 3'- uCGACC----UUA--------------UGGU------UCGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 114589 | 0.68 | 0.952715 |
Target: 5'- gGGCgUGGAccugacuaucaagauGUGgUucGUCAUGGGCGCCc -3' miRNA: 3'- -UCG-ACCU---------------UAUgGuuCGGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 215559 | 0.68 | 0.951097 |
Target: 5'- -aCUGGuacACCAGGCCAgGGaccGCGCCg -3' miRNA: 3'- ucGACCuuaUGGUUCGGUaCC---CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 120722 | 0.68 | 0.951097 |
Target: 5'- uGGCccUGGA---CCGuGGCCAccagGGGCACCa -3' miRNA: 3'- -UCG--ACCUuauGGU-UCGGUa---CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 234758 | 0.68 | 0.946892 |
Target: 5'- cGGCUGGcGUgaucacgcccuGCgGGGCCGcugGGGCACg -3' miRNA: 3'- -UCGACCuUA-----------UGgUUCGGUa--CCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 216878 | 0.68 | 0.946892 |
Target: 5'- gAGCgGGAcauCCAGGCCAUccaGGcCACCa -3' miRNA: 3'- -UCGaCCUuauGGUUCGGUAc--CC-GUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 134590 | 0.68 | 0.951097 |
Target: 5'- aGGCUGaGGAUGgaGacGGCCAUGuGCGCCg -3' miRNA: 3'- -UCGAC-CUUAUggU--UCGGUACcCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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