miRNA display CGI


Results 1 - 20 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 201115 1.13 0.003681
Target:  5'- gAGCUGGAAUACCAAGCCAUGGGCACCa -3'
miRNA:   3'- -UCGACCUUAUGGUUCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 888 1.13 0.003681
Target:  5'- gAGCUGGAAUACCAAGCCAUGGGCACCa -3'
miRNA:   3'- -UCGACCUUAUGGUUCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 89162 0.79 0.444681
Target:  5'- -cCUGGAcgGCUggGCCGUGGGCcugGCCc -3'
miRNA:   3'- ucGACCUuaUGGuuCGGUACCCG---UGG- -5'
14575 3' -53.7 NC_003521.1 + 173592 0.79 0.453786
Target:  5'- uGCUGGuc--CCAGGCCAUGaGCACCa -3'
miRNA:   3'- uCGACCuuauGGUUCGGUACcCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 213713 0.78 0.510395
Target:  5'- gGGCcucgGGGAUGCCcAGCCAgacGGCGCCg -3'
miRNA:   3'- -UCGa---CCUUAUGGuUCGGUac-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 65526 0.78 0.510395
Target:  5'- cAGCUGGGcgacGCCGAGaCCGUguucacGGGCACCg -3'
miRNA:   3'- -UCGACCUua--UGGUUC-GGUA------CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 130164 0.78 0.520123
Target:  5'- cGCUGGccgACCGGGCCGUGaccgugccGGCGCCc -3'
miRNA:   3'- uCGACCuuaUGGUUCGGUAC--------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 119759 0.77 0.549719
Target:  5'- cAGCUGGAGUACC-AGCaCAccUGGG-ACCg -3'
miRNA:   3'- -UCGACCUUAUGGuUCG-GU--ACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 126545 0.75 0.64082
Target:  5'- cAGCUGuGGUACUcgugcgcgaAGGCCGUGGGCAgCg -3'
miRNA:   3'- -UCGACcUUAUGG---------UUCGGUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 237722 0.75 0.64082
Target:  5'- gGGCUGGAugaACCcggGGGCCAUGugaGGUACCa -3'
miRNA:   3'- -UCGACCUua-UGG---UUCGGUAC---CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 39406 0.75 0.64082
Target:  5'- uGUUGGA--GCCGAGUU-UGGGCGCCg -3'
miRNA:   3'- uCGACCUuaUGGUUCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 112733 0.75 0.64082
Target:  5'- uGCUGGAGUcgcgcuuccaGCgCGAGcCCAUGGGCGgCa -3'
miRNA:   3'- uCGACCUUA----------UG-GUUC-GGUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 113546 0.75 0.64082
Target:  5'- cGGCgugucGGAcGUGCCGcGCC-UGGGCGCCa -3'
miRNA:   3'- -UCGa----CCU-UAUGGUuCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 7813 0.75 0.64082
Target:  5'- cAGCUGGAcgGCgucaAGGCCAUccGGCGCCa -3'
miRNA:   3'- -UCGACCUuaUGg---UUCGGUAc-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 18540 0.75 0.671333
Target:  5'- cGCUGGc--ACgGGGCUcUGGGCACCa -3'
miRNA:   3'- uCGACCuuaUGgUUCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 155386 0.75 0.671333
Target:  5'- cGGCgcGGAcgACgAGGCCGgcggggggcUGGGCACCg -3'
miRNA:   3'- -UCGa-CCUuaUGgUUCGGU---------ACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 106112 0.75 0.671333
Target:  5'- gGGCacgGGcGUGgC-GGCCGUGGGCACCu -3'
miRNA:   3'- -UCGa--CCuUAUgGuUCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 217368 0.75 0.681452
Target:  5'- uGCUGuGuaacacgGCCAGGCacacCGUGGGCACCg -3'
miRNA:   3'- uCGAC-Cuua----UGGUUCG----GUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 1538 0.74 0.69153
Target:  5'- gAGCUGGAAaACUacGAGCCGUucgccucGGCGCCa -3'
miRNA:   3'- -UCGACCUUaUGG--UUCGGUAc------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 201765 0.74 0.69153
Target:  5'- gAGCUGGAAaACUacGAGCCGUucgccucGGCGCCa -3'
miRNA:   3'- -UCGACCUUaUGG--UUCGGUAc------CCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.