miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 1538 0.74 0.69153
Target:  5'- gAGCUGGAAaACUacGAGCCGUucgccucGGCGCCa -3'
miRNA:   3'- -UCGACCUUaUGG--UUCGGUAc------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 200316 0.74 0.725376
Target:  5'- uGCUGGAGgaguucgagaugcgcUGCgGcGCCGUGGcGCGCCg -3'
miRNA:   3'- uCGACCUU---------------AUGgUuCGGUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 137522 0.73 0.73712
Target:  5'- uGCUGGAGUACCGgcgcgugguGGCCuacgacgagacGGCGCCg -3'
miRNA:   3'- uCGACCUUAUGGU---------UCGGuac--------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 215453 0.73 0.741006
Target:  5'- uGCUGGc--GCCAGGCCGaGGGaGCCa -3'
miRNA:   3'- uCGACCuuaUGGUUCGGUaCCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 109418 0.73 0.750655
Target:  5'- cGGCUGcaucaugGCCAggauagacagGGCCGUGGGCACg -3'
miRNA:   3'- -UCGACcuua---UGGU----------UCGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 86755 0.73 0.750655
Target:  5'- aGGCUGGGcaccgagagGCgCGAGagcuugaucuCCAUGGGCACCa -3'
miRNA:   3'- -UCGACCUua-------UG-GUUC----------GGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 47413 0.73 0.7602
Target:  5'- gAGCUGGAuguagcaucGCuCGGGCCA-GGGCACa -3'
miRNA:   3'- -UCGACCUua-------UG-GUUCGGUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 27379 0.73 0.769633
Target:  5'- cAGCcGGGggGCCAGGCCAcGGGgAUCu -3'
miRNA:   3'- -UCGaCCUuaUGGUUCGGUaCCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 218461 0.73 0.769633
Target:  5'- uGGCcGGc--ACCAcGCCGUGGGCGCa -3'
miRNA:   3'- -UCGaCCuuaUGGUuCGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 95157 0.73 0.769633
Target:  5'- gAGCaGGAAcuCgCGGGCCGaGGGCACCu -3'
miRNA:   3'- -UCGaCCUUauG-GUUCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 160306 0.72 0.788125
Target:  5'- aGGCggugGGcAcgGCCAucggAGCCGUGGGCGgCg -3'
miRNA:   3'- -UCGa---CC-UuaUGGU----UCGGUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 122714 0.72 0.797166
Target:  5'- gGGCUGGAGgcgguCguGGUCGUGGGCgacggcGCCg -3'
miRNA:   3'- -UCGACCUUau---GguUCGGUACCCG------UGG- -5'
14575 3' -53.7 NC_003521.1 + 220277 0.72 0.813062
Target:  5'- uGCUGGggUGCUcguugcccagcguauAGGCCAcgaacaugcacacgaUGGGgACCa -3'
miRNA:   3'- uCGACCuuAUGG---------------UUCGGU---------------ACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 98967 0.72 0.814796
Target:  5'- uGGCUGGugaggcGGUGCCGggAGCCGUaGGCGCg -3'
miRNA:   3'- -UCGACC------UUAUGGU--UCGGUAcCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 149157 0.72 0.814796
Target:  5'- cGCUgcGGAAUgcGCCAgggAGCCGcGGGCACg -3'
miRNA:   3'- uCGA--CCUUA--UGGU---UCGGUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 141260 0.72 0.823368
Target:  5'- cAGUUcGAc-GCCAAcaacGCCAUGGGCACCu -3'
miRNA:   3'- -UCGAcCUuaUGGUU----CGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 196951 0.72 0.823368
Target:  5'- uAGCgUGGGcgacgGCCcggGAGCCGgccgGGGCGCCu -3'
miRNA:   3'- -UCG-ACCUua---UGG---UUCGGUa---CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 35036 0.72 0.831768
Target:  5'- cGGUUGGGcacGCuCAuGCCGUGcGGCGCCa -3'
miRNA:   3'- -UCGACCUua-UG-GUuCGGUAC-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 177803 0.71 0.839988
Target:  5'- cGCUGGuggGC---GUCGUGGGCGCCg -3'
miRNA:   3'- uCGACCuuaUGguuCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 35141 0.71 0.848019
Target:  5'- uGCUGGccUACCugaCCGUGGGCAUg -3'
miRNA:   3'- uCGACCuuAUGGuucGGUACCCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.