Results 41 - 60 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 168930 | 0.71 | 0.848019 |
Target: 5'- uGCgUGGAGUACCugcuGAGCUAcUGGGagaGCCg -3' miRNA: 3'- uCG-ACCUUAUGG----UUCGGU-ACCCg--UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 207737 | 0.71 | 0.851178 |
Target: 5'- uGGCUGGAgcccGUGCagaAGGCCAucuucauggacccgcUGGGCGgCa -3' miRNA: 3'- -UCGACCU----UAUGg--UUCGGU---------------ACCCGUgG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 165446 | 0.71 | 0.855857 |
Target: 5'- gGGCgaGGggUGgCAGGCCuUGaGCACCa -3' miRNA: 3'- -UCGa-CCuuAUgGUUCGGuACcCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 77655 | 0.71 | 0.86274 |
Target: 5'- uGUUGGAAcUGCCGucgggagacagcaGGCCGggGGGCACg -3' miRNA: 3'- uCGACCUU-AUGGU-------------UCGGUa-CCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 71280 | 0.71 | 0.870924 |
Target: 5'- aGGCgGGGGccgcgGCaCGGGCCccugGGGCACCa -3' miRNA: 3'- -UCGaCCUUa----UG-GUUCGGua--CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 213286 | 0.71 | 0.870924 |
Target: 5'- cGgUGGAG-ACCGucuacGCCAccgUGGGCGCCu -3' miRNA: 3'- uCgACCUUaUGGUu----CGGU---ACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 106326 | 0.7 | 0.875998 |
Target: 5'- aAGCUGGAggGC--AGCCAuuuguaagggauuuUGGGCugCg -3' miRNA: 3'- -UCGACCUuaUGguUCGGU--------------ACCCGugG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 191389 | 0.7 | 0.878141 |
Target: 5'- cGGCgUGGAggACCAGGCuCAUGGGauaguguCCc -3' miRNA: 3'- -UCG-ACCUuaUGGUUCG-GUACCCgu-----GG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 152587 | 0.7 | 0.878141 |
Target: 5'- uAGUUGGAGUACaCGauGGCCuccucGGCGCCc -3' miRNA: 3'- -UCGACCUUAUG-GU--UCGGuac--CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 8524 | 0.7 | 0.878141 |
Target: 5'- cGGUUGauuGUGCCcGGaCCGUGGGCGCg -3' miRNA: 3'- -UCGACcu-UAUGGuUC-GGUACCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 188688 | 0.7 | 0.891917 |
Target: 5'- gGGCggGGGAUACgCGGGUCccGuGGCGCCc -3' miRNA: 3'- -UCGa-CCUUAUG-GUUCGGuaC-CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 95557 | 0.7 | 0.891917 |
Target: 5'- gAGCUGGcc-GCCgAGGCCGagGaGGCGCCc -3' miRNA: 3'- -UCGACCuuaUGG-UUCGGUa-C-CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 17424 | 0.7 | 0.898469 |
Target: 5'- cGCcGGGGcGCCAcacGGCCcgcgucgGGGCGCCg -3' miRNA: 3'- uCGaCCUUaUGGU---UCGGua-----CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 197324 | 0.7 | 0.898469 |
Target: 5'- -uCUGGucgGCCAGGCCcUGGGCGa- -3' miRNA: 3'- ucGACCuuaUGGUUCGGuACCCGUgg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 181294 | 0.7 | 0.898469 |
Target: 5'- cAGCcgGGAAgagaagcucagGCCGcccgcgGGCCA-GGGCGCCg -3' miRNA: 3'- -UCGa-CCUUa----------UGGU------UCGGUaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 134741 | 0.7 | 0.903544 |
Target: 5'- cAGCUacaacuuCCAGGCCAUcuuuccGGGCACCa -3' miRNA: 3'- -UCGAccuuau-GGUUCGGUA------CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 20634 | 0.7 | 0.90479 |
Target: 5'- uGCUcGGAGaGCCGcGCgCugGUGGGCGCCu -3' miRNA: 3'- uCGA-CCUUaUGGUuCG-G--UACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 130370 | 0.7 | 0.90479 |
Target: 5'- gAGCaGGAAUuCCuccCCcUGGGCACCa -3' miRNA: 3'- -UCGaCCUUAuGGuucGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 74084 | 0.7 | 0.909077 |
Target: 5'- cAGCUGGugcugGCCGAcaugcugcGCgacugcgcgacgccCAUGGGCGCCg -3' miRNA: 3'- -UCGACCuua--UGGUU--------CG--------------GUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 39439 | 0.7 | 0.910879 |
Target: 5'- cGCUGccg-GCCGAGCCc--GGCGCCg -3' miRNA: 3'- uCGACcuuaUGGUUCGGuacCCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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