miRNA display CGI


Results 61 - 80 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 86337 0.7 0.910879
Target:  5'- uGCUGGAGgucuUGCCGGcGCCGgcGGUGCCg -3'
miRNA:   3'- uCGACCUU----AUGGUU-CGGUacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 39439 0.7 0.910879
Target:  5'- cGCUGccg-GCCGAGCCc--GGCGCCg -3'
miRNA:   3'- uCGACcuuaUGGUUCGGuacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 40749 0.69 0.916733
Target:  5'- uGCUGGcgagGCCAAGCCGgcGGUaaGCCa -3'
miRNA:   3'- uCGACCuua-UGGUUCGGUacCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 215381 0.69 0.916733
Target:  5'- aGGCagaGGAcgGCCAGGaa--GGGCACCa -3'
miRNA:   3'- -UCGa--CCUuaUGGUUCgguaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 30949 0.69 0.916733
Target:  5'- cGUaGGuAGUGCCAAGCCA--GGCGCUc -3'
miRNA:   3'- uCGaCC-UUAUGGUUCGGUacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 427 0.69 0.916733
Target:  5'- uGCUGGcgagGCCAAGCCGgcGGUaaGCCa -3'
miRNA:   3'- uCGACCuua-UGGUUCGGUacCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 148713 0.69 0.922352
Target:  5'- cGCacccgGGggUuCCGA-CCcgGGGCACCg -3'
miRNA:   3'- uCGa----CCuuAuGGUUcGGuaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 149441 0.69 0.922352
Target:  5'- gGGUcgGGggU-CCGGGCCcgGGGUucgGCCc -3'
miRNA:   3'- -UCGa-CCuuAuGGUUCGGuaCCCG---UGG- -5'
14575 3' -53.7 NC_003521.1 + 212284 0.69 0.922352
Target:  5'- aGGCUGGccaggGCgaAGGCCGgcaUGGGCACg -3'
miRNA:   3'- -UCGACCuua--UGg-UUCGGU---ACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 93049 0.69 0.927205
Target:  5'- cGCUGGGcuucaacACCGuggugguGGCCAUGGGC-CUg -3'
miRNA:   3'- uCGACCUua-----UGGU-------UCGGUACCCGuGG- -5'
14575 3' -53.7 NC_003521.1 + 171301 0.69 0.927733
Target:  5'- gGGCUGGAaggcgGUGCUggGCCucaacgcGGccuGCGCCg -3'
miRNA:   3'- -UCGACCU-----UAUGGuuCGGua-----CC---CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 26289 0.69 0.932877
Target:  5'- uGCUGG--UGCUggGCaucuuggaGGGCACCg -3'
miRNA:   3'- uCGACCuuAUGGuuCGgua-----CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 129017 0.69 0.932877
Target:  5'- cGCUGGc--GCC--GCCAgaGGGCACCc -3'
miRNA:   3'- uCGACCuuaUGGuuCGGUa-CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 145033 0.69 0.932877
Target:  5'- cGCUGGAucGCguGGCCGaGcGGCACg -3'
miRNA:   3'- uCGACCUuaUGguUCGGUaC-CCGUGg -5'
14575 3' -53.7 NC_003521.1 + 88212 0.69 0.937784
Target:  5'- cGcCUGGug-ACCAA-CCA-GGGCGCCg -3'
miRNA:   3'- uC-GACCuuaUGGUUcGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 166226 0.69 0.937784
Target:  5'- cAGCUGGuagaagagcguGAUGCCGcccggcgagcgGGCCGUgcucacGGGCACg -3'
miRNA:   3'- -UCGACC-----------UUAUGGU-----------UCGGUA------CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 59351 0.69 0.937784
Target:  5'- gAGCUGGGAUG---GGCCGUcuGCGCCg -3'
miRNA:   3'- -UCGACCUUAUgguUCGGUAccCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 128912 0.69 0.937784
Target:  5'- cGCUGG-AUGCgguugaGGGCC-UGGcGCGCCa -3'
miRNA:   3'- uCGACCuUAUGg-----UUCGGuACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 99318 0.69 0.937784
Target:  5'- aGGUccgGGAcgaGgCGGGCCAggUGGGCACCu -3'
miRNA:   3'- -UCGa--CCUua-UgGUUCGGU--ACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 167374 0.69 0.937784
Target:  5'- uGCUGGGuacagAUAUCGAGCgAcgcGGGCACg -3'
miRNA:   3'- uCGACCU-----UAUGGUUCGgUa--CCCGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.