Results 101 - 120 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 27398 | 0.68 | 0.951097 |
Target: 5'- cGCUGGGAgACCAucuGCuCGcGGGUGCUg -3' miRNA: 3'- uCGACCUUaUGGUu--CG-GUaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 114589 | 0.68 | 0.952715 |
Target: 5'- gGGCgUGGAccugacuaucaagauGUGgUucGUCAUGGGCGCCc -3' miRNA: 3'- -UCG-ACCU---------------UAUgGuuCGGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 64319 | 0.68 | 0.953905 |
Target: 5'- cGCUGGccauGGUacacgagcagaugaGCCAgcugcaGGCCcUGGGCGCCc -3' miRNA: 3'- uCGACC----UUA--------------UGGU------UCGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 148353 | 0.68 | 0.955074 |
Target: 5'- aGGCUGGGAgACCcccgagcgggcAAGCCGagcgGGGUGCg -3' miRNA: 3'- -UCGACCUUaUGG-----------UUCGGUa---CCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 39404 | 0.68 | 0.958825 |
Target: 5'- cAGCUGGuccuguugGCaCAGGCCGUccagucccguagGcGGCGCCg -3' miRNA: 3'- -UCGACCuua-----UG-GUUCGGUA------------C-CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 130405 | 0.68 | 0.958825 |
Target: 5'- uGCUGGAGUugCAgaagcucuggcuGGgCGUGGaGUAUCa -3' miRNA: 3'- uCGACCUUAugGU------------UCgGUACC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 226378 | 0.68 | 0.958825 |
Target: 5'- cGGCUGacgccGCCGcagGGCCGUGuGCACCa -3' miRNA: 3'- -UCGACcuua-UGGU---UCGGUACcCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 225068 | 0.68 | 0.958825 |
Target: 5'- uAGCUcGGGcAUGCUgcuGCCcgGGcGCACCu -3' miRNA: 3'- -UCGA-CCU-UAUGGuu-CGGuaCC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 187058 | 0.68 | 0.958825 |
Target: 5'- gGGCgGGAaggGUGCCAgcgAGCgGaGGGCGCg -3' miRNA: 3'- -UCGaCCU---UAUGGU---UCGgUaCCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 239631 | 0.68 | 0.958825 |
Target: 5'- cAGCUGGuccuguugGCaCAGGCCGUccagucccguagGcGGCGCCg -3' miRNA: 3'- -UCGACCuua-----UG-GUUCGGUA------------C-CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 114038 | 0.68 | 0.958825 |
Target: 5'- gAGCUGGAccacGCgCAGcGCCA-GGGCcuGCCg -3' miRNA: 3'- -UCGACCUua--UG-GUU-CGGUaCCCG--UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 121902 | 0.68 | 0.958825 |
Target: 5'- uGGCUGGGGcagaugGCCcGGCCcGUGGGguugugcacguuCACCg -3' miRNA: 3'- -UCGACCUUa-----UGGuUCGG-UACCC------------GUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 87403 | 0.68 | 0.958825 |
Target: 5'- cGGCUGcugcugACCAcGCCgGUGGcGCACCu -3' miRNA: 3'- -UCGACcuua--UGGUuCGG-UACC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 216111 | 0.68 | 0.958825 |
Target: 5'- -cCUGGGgugacgacAUACCcuGAGUCAUGGGUAUCc -3' miRNA: 3'- ucGACCU--------UAUGG--UUCGGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 93219 | 0.67 | 0.962356 |
Target: 5'- cAGUUcGggUACCA--CC-UGGGCACCu -3' miRNA: 3'- -UCGAcCuuAUGGUucGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 113741 | 0.67 | 0.962356 |
Target: 5'- gGGCUGGGccGCCucucgucgguGGCCcUGcccGGCACCg -3' miRNA: 3'- -UCGACCUuaUGGu---------UCGGuAC---CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 91189 | 0.67 | 0.962356 |
Target: 5'- -uCUGGAagcgGUACCGcgggcgcGUCGUGGGCACa -3' miRNA: 3'- ucGACCU----UAUGGUu------CGGUACCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 1352 | 0.67 | 0.962356 |
Target: 5'- cGGCUGGG--GCUGAacgcGCCGcGGGcCACCg -3' miRNA: 3'- -UCGACCUuaUGGUU----CGGUaCCC-GUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 224586 | 0.67 | 0.964699 |
Target: 5'- aGGCUGaGGUacauuucgcacucgGCCAGGCgGcaGGGCGCCg -3' miRNA: 3'- -UCGACcUUA--------------UGGUUCGgUa-CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 144115 | 0.67 | 0.96567 |
Target: 5'- uGCUGGAccGCCGcGGCCuggacgaGGuGCGCCu -3' miRNA: 3'- uCGACCUuaUGGU-UCGGua-----CC-CGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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