miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 103130 0.66 0.985135
Target:  5'- aGGCUGGuggggaGAGCCcagGGGCAgCa -3'
miRNA:   3'- -UCGACCuuauggUUCGGua-CCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 201439 0.66 0.985135
Target:  5'- cAGCUG---UACCuGGCCcUGGGCGUCa -3'
miRNA:   3'- -UCGACcuuAUGGuUCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 35043 0.66 0.983322
Target:  5'- cAGCUGGAccgucgguugGUACUuccagcGGGCCAUGcGGgACg -3'
miRNA:   3'- -UCGACCU----------UAUGG------UUCGGUAC-CCgUGg -5'
14575 3' -53.7 NC_003521.1 + 38466 0.66 0.983322
Target:  5'- cGuCUGG---GCUcuGGCgGUGGGCGCCg -3'
miRNA:   3'- uC-GACCuuaUGGu-UCGgUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 113976 0.66 0.983322
Target:  5'- cGGCaGGcg-GCC-GGCC--GGGCACCg -3'
miRNA:   3'- -UCGaCCuuaUGGuUCGGuaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 136117 0.66 0.983322
Target:  5'- gGGaCUGGuGUACgAGGCgcucuacccCGUGGcGCGCCg -3'
miRNA:   3'- -UC-GACCuUAUGgUUCG---------GUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 65978 0.66 0.983322
Target:  5'- uGGCUGGAcgugGCCAcGCC--GGaCACCa -3'
miRNA:   3'- -UCGACCUua--UGGUuCGGuaCCcGUGG- -5'
14575 3' -53.7 NC_003521.1 + 34332 0.66 0.983132
Target:  5'- cGUUGGAAgcgGCgCAgggcggaGGCCGUGaGGC-CCa -3'
miRNA:   3'- uCGACCUUa--UG-GU-------UCGGUAC-CCGuGG- -5'
14575 3' -53.7 NC_003521.1 + 238008 0.66 0.983132
Target:  5'- cGGCUGGGucGCCAGucuucgucaucgcGUCGUaGGGC-CCg -3'
miRNA:   3'- -UCGACCUuaUGGUU-------------CGGUA-CCCGuGG- -5'
14575 3' -53.7 NC_003521.1 + 14201 0.66 0.983132
Target:  5'- aAGCUGGuGUGCUgcggcgagccccuGAcGCCGcUGGGCuacGCCg -3'
miRNA:   3'- -UCGACCuUAUGG-------------UU-CGGU-ACCCG---UGG- -5'
14575 3' -53.7 NC_003521.1 + 185124 0.66 0.981552
Target:  5'- uGCUGGAGcacgggaugcgcaacUGCCAguuccucucgguggGGCCcgacgacgagGUGGcGCACCu -3'
miRNA:   3'- uCGACCUU---------------AUGGU--------------UCGG----------UACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 225114 0.66 0.981347
Target:  5'- uGC-GGGAUGCCGAGCgAca-GCACCu -3'
miRNA:   3'- uCGaCCUUAUGGUUCGgUaccCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 101425 0.66 0.981347
Target:  5'- cGGCUGGAAgAgCAGuaCGUuGGGCGCg -3'
miRNA:   3'- -UCGACCUUaUgGUUcgGUA-CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 155289 0.66 0.981347
Target:  5'- cGCUGGG----CAAcGCCAUGGGCuuCg -3'
miRNA:   3'- uCGACCUuaugGUU-CGGUACCCGugG- -5'
14575 3' -53.7 NC_003521.1 + 93320 0.66 0.981347
Target:  5'- cAGCUGGugcuuCgGGGCCGuguuccucaucUGGGcCACCu -3'
miRNA:   3'- -UCGACCuuau-GgUUCGGU-----------ACCC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 185336 0.66 0.981347
Target:  5'- uGGCUGGAGcACCAGGaggaCGgcaagGcGGCGCa -3'
miRNA:   3'- -UCGACCUUaUGGUUCg---GUa----C-CCGUGg -5'
14575 3' -53.7 NC_003521.1 + 148632 0.66 0.981347
Target:  5'- gGGCgggGGAGggg-AGGCCA-GGGCAUCg -3'
miRNA:   3'- -UCGa--CCUUauggUUCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 234053 0.66 0.979203
Target:  5'- cGGCaUGGuacuCCuGGCCAUGGaCGCCc -3'
miRNA:   3'- -UCG-ACCuuauGGuUCGGUACCcGUGG- -5'
14575 3' -53.7 NC_003521.1 + 18646 0.66 0.979203
Target:  5'- uGGCgUGGG--GCCGcacggaccugcuGGCCAcggGGGCGCUg -3'
miRNA:   3'- -UCG-ACCUuaUGGU------------UCGGUa--CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 764 0.66 0.979203
Target:  5'- cGCcGGAG-GCCAAGCa---GGCGCCa -3'
miRNA:   3'- uCGaCCUUaUGGUUCGguacCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.