miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 18646 0.66 0.979203
Target:  5'- uGGCgUGGG--GCCGcacggaccugcuGGCCAcggGGGCGCUg -3'
miRNA:   3'- -UCG-ACCUuaUGGU------------UCGGUa--CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 174213 0.67 0.97688
Target:  5'- cGUUGGggUcGCgCGGGUCGggcagGGGCGCg -3'
miRNA:   3'- uCGACCuuA-UG-GUUCGGUa----CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 103865 0.67 0.97688
Target:  5'- aGGCUGGcg-AUCAGcGCCGacagggggaUGGGCuGCCg -3'
miRNA:   3'- -UCGACCuuaUGGUU-CGGU---------ACCCG-UGG- -5'
14575 3' -53.7 NC_003521.1 + 184173 0.67 0.974372
Target:  5'- gAGCgGGAGgugcACCGGcCCGUGGuGCGCUu -3'
miRNA:   3'- -UCGaCCUUa---UGGUUcGGUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 223390 0.67 0.974372
Target:  5'- cGGCgccccgACgCGGGCCGUGuGGCGCCc -3'
miRNA:   3'- -UCGaccuuaUG-GUUCGGUAC-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 119624 0.67 0.974372
Target:  5'- cAGgUGGAcguuUACCcacuGGCCGcGGGCGuCCg -3'
miRNA:   3'- -UCgACCUu---AUGGu---UCGGUaCCCGU-GG- -5'
14575 3' -53.7 NC_003521.1 + 193213 0.67 0.974372
Target:  5'- cGcCUGGAcgauggcgGCCAAGUCGggcgGGaGCGCCu -3'
miRNA:   3'- uC-GACCUua------UGGUUCGGUa---CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 198248 0.67 0.974111
Target:  5'- uAGCUGGcuGAcGCCGcagcgauAGCCGUcccaGcGGCACCa -3'
miRNA:   3'- -UCGACC--UUaUGGU-------UCGGUA----C-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 131853 0.67 0.972776
Target:  5'- gGGCUGGuucaaggcgGCCAcGGCCAUcgugccgcgcgugucGGGCAgCg -3'
miRNA:   3'- -UCGACCuua------UGGU-UCGGUA---------------CCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 181904 0.67 0.971673
Target:  5'- --gUGGuAUACCAGGUCA-GGGCucCCa -3'
miRNA:   3'- ucgACCuUAUGGUUCGGUaCCCGu-GG- -5'
14575 3' -53.7 NC_003521.1 + 31498 0.67 0.971673
Target:  5'- gGGUUGGcacagGCCcAGcCCGUGGGCAa- -3'
miRNA:   3'- -UCGACCuua--UGGuUC-GGUACCCGUgg -5'
14575 3' -53.7 NC_003521.1 + 130260 0.67 0.971673
Target:  5'- gAGgUGGAcgACUA---CGUGGGCGCCc -3'
miRNA:   3'- -UCgACCUuaUGGUucgGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 87076 0.67 0.971673
Target:  5'- gGGCuguacgUGGAuUGgUggGCCAcggUGGGCAUCg -3'
miRNA:   3'- -UCG------ACCUuAUgGuuCGGU---ACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 77959 0.67 0.971673
Target:  5'- uGCUGGGucuuggaGCC-GGCCGcGGGCucGCCg -3'
miRNA:   3'- uCGACCUua-----UGGuUCGGUaCCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 152273 0.67 0.971673
Target:  5'- cAGCUGGugcccUGCCccgaggAGGCCGUuucGGuGCGCCu -3'
miRNA:   3'- -UCGACCuu---AUGG------UUCGGUA---CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 8349 0.67 0.971673
Target:  5'- aAGCUGGggUAgCGcucgcAGCCAgagaagaaaaacUGGGUgguCCa -3'
miRNA:   3'- -UCGACCuuAUgGU-----UCGGU------------ACCCGu--GG- -5'
14575 3' -53.7 NC_003521.1 + 210407 0.67 0.971673
Target:  5'- cAGCUGGG--ACCGcAGCguggucggCGUGGGCGgCg -3'
miRNA:   3'- -UCGACCUuaUGGU-UCG--------GUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 77250 0.67 0.968774
Target:  5'- cGGCgggguccacGGggUACUc-GCCGccGGGCACCa -3'
miRNA:   3'- -UCGa--------CCuuAUGGuuCGGUa-CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 16685 0.67 0.968774
Target:  5'- cGGCUGGGAcGCCuucaCCAUGuGGCAg- -3'
miRNA:   3'- -UCGACCUUaUGGuuc-GGUAC-CCGUgg -5'
14575 3' -53.7 NC_003521.1 + 113846 0.67 0.968774
Target:  5'- uGCUGGggUuucuuCCGAGC-GUGGcggugguguaaGCGCCg -3'
miRNA:   3'- uCGACCuuAu----GGUUCGgUACC-----------CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.