miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 16685 0.67 0.968774
Target:  5'- cGGCUGGGAcGCCuucaCCAUGuGGCAg- -3'
miRNA:   3'- -UCGACCUUaUGGuuc-GGUAC-CCGUgg -5'
14575 3' -53.7 NC_003521.1 + 83217 0.67 0.96567
Target:  5'- cGCUGGggUACaCGGuGCCcucGGcGCACUu -3'
miRNA:   3'- uCGACCuuAUG-GUU-CGGua-CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 66012 0.67 0.96567
Target:  5'- uGCUGGAGaACC---CCguGUGGGCGCUg -3'
miRNA:   3'- uCGACCUUaUGGuucGG--UACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 144115 0.67 0.96567
Target:  5'- uGCUGGAccGCCGcGGCCuggacgaGGuGCGCCu -3'
miRNA:   3'- uCGACCUuaUGGU-UCGGua-----CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 223775 0.67 0.96567
Target:  5'- cGCUGucggcGCCGuuaccGCCGUGGGcCGCCa -3'
miRNA:   3'- uCGACcuua-UGGUu----CGGUACCC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 224586 0.67 0.964699
Target:  5'- aGGCUGaGGUacauuucgcacucgGCCAGGCgGcaGGGCGCCg -3'
miRNA:   3'- -UCGACcUUA--------------UGGUUCGgUa-CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 91189 0.67 0.962356
Target:  5'- -uCUGGAagcgGUACCGcgggcgcGUCGUGGGCACa -3'
miRNA:   3'- ucGACCU----UAUGGUu------CGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 113741 0.67 0.962356
Target:  5'- gGGCUGGGccGCCucucgucgguGGCCcUGcccGGCACCg -3'
miRNA:   3'- -UCGACCUuaUGGu---------UCGGuAC---CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 93219 0.67 0.962356
Target:  5'- cAGUUcGggUACCA--CC-UGGGCACCu -3'
miRNA:   3'- -UCGAcCuuAUGGUucGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 1352 0.67 0.962356
Target:  5'- cGGCUGGG--GCUGAacgcGCCGcGGGcCACCg -3'
miRNA:   3'- -UCGACCUuaUGGUU----CGGUaCCC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 39404 0.68 0.958825
Target:  5'- cAGCUGGuccuguugGCaCAGGCCGUccagucccguagGcGGCGCCg -3'
miRNA:   3'- -UCGACCuua-----UG-GUUCGGUA------------C-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 187058 0.68 0.958825
Target:  5'- gGGCgGGAaggGUGCCAgcgAGCgGaGGGCGCg -3'
miRNA:   3'- -UCGaCCU---UAUGGU---UCGgUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 121902 0.68 0.958825
Target:  5'- uGGCUGGGGcagaugGCCcGGCCcGUGGGguugugcacguuCACCg -3'
miRNA:   3'- -UCGACCUUa-----UGGuUCGG-UACCC------------GUGG- -5'
14575 3' -53.7 NC_003521.1 + 216111 0.68 0.958825
Target:  5'- -cCUGGGgugacgacAUACCcuGAGUCAUGGGUAUCc -3'
miRNA:   3'- ucGACCU--------UAUGG--UUCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 114038 0.68 0.958825
Target:  5'- gAGCUGGAccacGCgCAGcGCCA-GGGCcuGCCg -3'
miRNA:   3'- -UCGACCUua--UG-GUU-CGGUaCCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 225068 0.68 0.958825
Target:  5'- uAGCUcGGGcAUGCUgcuGCCcgGGcGCACCu -3'
miRNA:   3'- -UCGA-CCU-UAUGGuu-CGGuaCC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 239631 0.68 0.958825
Target:  5'- cAGCUGGuccuguugGCaCAGGCCGUccagucccguagGcGGCGCCg -3'
miRNA:   3'- -UCGACCuua-----UG-GUUCGGUA------------C-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 130405 0.68 0.958825
Target:  5'- uGCUGGAGUugCAgaagcucuggcuGGgCGUGGaGUAUCa -3'
miRNA:   3'- uCGACCUUAugGU------------UCgGUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 226378 0.68 0.958825
Target:  5'- cGGCUGacgccGCCGcagGGCCGUGuGCACCa -3'
miRNA:   3'- -UCGACcuua-UGGU---UCGGUACcCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 87403 0.68 0.958825
Target:  5'- cGGCUGcugcugACCAcGCCgGUGGcGCACCu -3'
miRNA:   3'- -UCGACcuua--UGGUuCGG-UACC-CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.