Results 81 - 100 of 184 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 148353 | 0.68 | 0.955074 |
Target: 5'- aGGCUGGGAgACCcccgagcgggcAAGCCGagcgGGGUGCg -3' miRNA: 3'- -UCGACCUUaUGG-----------UUCGGUa---CCCGUGg -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 64319 | 0.68 | 0.953905 |
Target: 5'- cGCUGGccauGGUacacgagcagaugaGCCAgcugcaGGCCcUGGGCGCCc -3' miRNA: 3'- uCGACC----UUA--------------UGGU------UCGGuACCCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 114589 | 0.68 | 0.952715 |
Target: 5'- gGGCgUGGAccugacuaucaagauGUGgUucGUCAUGGGCGCCc -3' miRNA: 3'- -UCG-ACCU---------------UAUgGuuCGGUACCCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 37704 | 0.68 | 0.951097 |
Target: 5'- cGGCUcgcaGAGUGCCuuuGGCCAgGcGGCGCUg -3' miRNA: 3'- -UCGAc---CUUAUGGu--UCGGUaC-CCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 120722 | 0.68 | 0.951097 |
Target: 5'- uGGCccUGGA---CCGuGGCCAccagGGGCACCa -3' miRNA: 3'- -UCG--ACCUuauGGU-UCGGUa---CCCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 134590 | 0.68 | 0.951097 |
Target: 5'- aGGCUGaGGAUGgaGacGGCCAUGuGCGCCg -3' miRNA: 3'- -UCGAC-CUUAUggU--UCGGUACcCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 215559 | 0.68 | 0.951097 |
Target: 5'- -aCUGGuacACCAGGCCAgGGaccGCGCCg -3' miRNA: 3'- ucGACCuuaUGGUUCGGUaCC---CGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 27398 | 0.68 | 0.951097 |
Target: 5'- cGCUGGGAgACCAucuGCuCGcGGGUGCUg -3' miRNA: 3'- uCGACCUUaUGGUu--CG-GUaCCCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 170094 | 0.68 | 0.946892 |
Target: 5'- cAGCUGGAcgaaGUGCCGguacauccGGCgCA--GGCGCCg -3' miRNA: 3'- -UCGACCU----UAUGGU--------UCG-GUacCCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 53954 | 0.68 | 0.946892 |
Target: 5'- gAGCUGGGccgaCGAGCCGUGcuGCACg -3' miRNA: 3'- -UCGACCUuaugGUUCGGUACc-CGUGg -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 128977 | 0.68 | 0.946892 |
Target: 5'- cGCUGGAAaaagACgAuGC--UGGGCACCa -3' miRNA: 3'- uCGACCUUa---UGgUuCGguACCCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 78395 | 0.68 | 0.946892 |
Target: 5'- cGGaCUGGAA-ACCGaaAGCgCGUGGGaGCCa -3' miRNA: 3'- -UC-GACCUUaUGGU--UCG-GUACCCgUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 20415 | 0.68 | 0.946892 |
Target: 5'- cAGCUGGccuucACCuucGGCC-UGGGCAgCg -3' miRNA: 3'- -UCGACCuua--UGGu--UCGGuACCCGUgG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 17639 | 0.68 | 0.946892 |
Target: 5'- cGCUGcGGAgcUACguAcGCCAgcaccgGGGCACCa -3' miRNA: 3'- uCGAC-CUU--AUGguU-CGGUa-----CCCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 227583 | 0.68 | 0.946892 |
Target: 5'- uAGgaGGAcggaugaggcAUGgCAGGCU-UGGGCGCCg -3' miRNA: 3'- -UCgaCCU----------UAUgGUUCGGuACCCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 150513 | 0.68 | 0.946892 |
Target: 5'- cGGCgGGGcccUGCUaggagcggGAGCCGUGGGguCCg -3' miRNA: 3'- -UCGaCCUu--AUGG--------UUCGGUACCCguGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 216878 | 0.68 | 0.946892 |
Target: 5'- gAGCgGGAcauCCAGGCCAUccaGGcCACCa -3' miRNA: 3'- -UCGaCCUuauGGUUCGGUAc--CC-GUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 234758 | 0.68 | 0.946892 |
Target: 5'- cGGCUGGcGUgaucacgcccuGCgGGGCCGcugGGGCACg -3' miRNA: 3'- -UCGACCuUA-----------UGgUUCGGUa--CCCGUGg -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 79057 | 0.68 | 0.946892 |
Target: 5'- uGGCguagGGggU-CCGGGgCucGGGCACCa -3' miRNA: 3'- -UCGa---CCuuAuGGUUCgGuaCCCGUGG- -5' |
|||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 24822 | 0.68 | 0.945145 |
Target: 5'- uGCUGGugggcuucuacACCA--CCAUGGGCAUCa -3' miRNA: 3'- uCGACCuua--------UGGUucGGUACCCGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home