miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 427 0.69 0.916733
Target:  5'- uGCUGGcgagGCCAAGCCGgcGGUaaGCCa -3'
miRNA:   3'- uCGACCuua-UGGUUCGGUacCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 764 0.66 0.979203
Target:  5'- cGCcGGAG-GCCAAGCa---GGCGCCa -3'
miRNA:   3'- uCGaCCUUaUGGUUCGguacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 888 1.13 0.003681
Target:  5'- gAGCUGGAAUACCAAGCCAUGGGCACCa -3'
miRNA:   3'- -UCGACCUUAUGGUUCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 1211 0.66 0.985135
Target:  5'- cAGCUG---UACCuGGCCcUGGGCGUCa -3'
miRNA:   3'- -UCGACcuuAUGGuUCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 1352 0.67 0.962356
Target:  5'- cGGCUGGG--GCUGAacgcGCCGcGGGcCACCg -3'
miRNA:   3'- -UCGACCUuaUGGUU----CGGUaCCC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 1538 0.74 0.69153
Target:  5'- gAGCUGGAAaACUacGAGCCGUucgccucGGCGCCa -3'
miRNA:   3'- -UCGACCUUaUGG--UUCGGUAc------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 4306 0.66 0.985135
Target:  5'- aGGCagagGGAcgGCCGGGggcucgaccguCCAUGccuGGCGCCa -3'
miRNA:   3'- -UCGa---CCUuaUGGUUC-----------GGUAC---CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 7813 0.75 0.64082
Target:  5'- cAGCUGGAcgGCgucaAGGCCAUccGGCGCCa -3'
miRNA:   3'- -UCGACCUuaUGg---UUCGGUAc-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 8349 0.67 0.971673
Target:  5'- aAGCUGGggUAgCGcucgcAGCCAgagaagaaaaacUGGGUgguCCa -3'
miRNA:   3'- -UCGACCuuAUgGU-----UCGGU------------ACCCGu--GG- -5'
14575 3' -53.7 NC_003521.1 + 8524 0.7 0.878141
Target:  5'- cGGUUGauuGUGCCcGGaCCGUGGGCGCg -3'
miRNA:   3'- -UCGACcu-UAUGGuUC-GGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 14201 0.66 0.983132
Target:  5'- aAGCUGGuGUGCUgcggcgagccccuGAcGCCGcUGGGCuacGCCg -3'
miRNA:   3'- -UCGACCuUAUGG-------------UU-CGGU-ACCCG---UGG- -5'
14575 3' -53.7 NC_003521.1 + 16275 0.74 0.69153
Target:  5'- cGCUGGuuccUGCUGGgcGCCGUGGGUGCCu -3'
miRNA:   3'- uCGACCuu--AUGGUU--CGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 16685 0.67 0.968774
Target:  5'- cGGCUGGGAcGCCuucaCCAUGuGGCAg- -3'
miRNA:   3'- -UCGACCUUaUGGuuc-GGUAC-CCGUgg -5'
14575 3' -53.7 NC_003521.1 + 17424 0.7 0.898469
Target:  5'- cGCcGGGGcGCCAcacGGCCcgcgucgGGGCGCCg -3'
miRNA:   3'- uCGaCCUUaUGGU---UCGGua-----CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 17639 0.68 0.946892
Target:  5'- cGCUGcGGAgcUACguAcGCCAgcaccgGGGCACCa -3'
miRNA:   3'- uCGAC-CUU--AUGguU-CGGUa-----CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 18540 0.75 0.671333
Target:  5'- cGCUGGc--ACgGGGCUcUGGGCACCa -3'
miRNA:   3'- uCGACCuuaUGgUUCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 18646 0.66 0.979203
Target:  5'- uGGCgUGGG--GCCGcacggaccugcuGGCCAcggGGGCGCUg -3'
miRNA:   3'- -UCG-ACCUuaUGGU------------UCGGUa--CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 20280 0.66 0.986793
Target:  5'- cAGC-GGAGUgcgguggaucucGCCGGcGCCAUGcaGCACCa -3'
miRNA:   3'- -UCGaCCUUA------------UGGUU-CGGUACc-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 20415 0.68 0.946892
Target:  5'- cAGCUGGccuucACCuucGGCC-UGGGCAgCg -3'
miRNA:   3'- -UCGACCuua--UGGu--UCGGuACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 20634 0.7 0.90479
Target:  5'- uGCUcGGAGaGCCGcGCgCugGUGGGCGCCu -3'
miRNA:   3'- uCGA-CCUUaUGGUuCG-G--UACCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.