miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 24822 0.68 0.945145
Target:  5'- uGCUGGugggcuucuacACCA--CCAUGGGCAUCa -3'
miRNA:   3'- uCGACCuua--------UGGUucGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 26289 0.69 0.932877
Target:  5'- uGCUGG--UGCUggGCaucuuggaGGGCACCg -3'
miRNA:   3'- uCGACCuuAUGGuuCGgua-----CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 27379 0.73 0.769633
Target:  5'- cAGCcGGGggGCCAGGCCAcGGGgAUCu -3'
miRNA:   3'- -UCGaCCUuaUGGUUCGGUaCCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 27398 0.68 0.951097
Target:  5'- cGCUGGGAgACCAucuGCuCGcGGGUGCUg -3'
miRNA:   3'- uCGACCUUaUGGUu--CG-GUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 28090 0.66 0.986793
Target:  5'- cGGCgGGGAaGCCGAGCa---GGCGCUc -3'
miRNA:   3'- -UCGaCCUUaUGGUUCGguacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 30436 0.66 0.985135
Target:  5'- cAGCUGaacAUGuCCAggcGGCCGaGGGUGCCg -3'
miRNA:   3'- -UCGACcu-UAU-GGU---UCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 30949 0.69 0.916733
Target:  5'- cGUaGGuAGUGCCAAGCCA--GGCGCUc -3'
miRNA:   3'- uCGaCC-UUAUGGUUCGGUacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 31498 0.67 0.971673
Target:  5'- gGGUUGGcacagGCCcAGcCCGUGGGCAa- -3'
miRNA:   3'- -UCGACCuua--UGGuUC-GGUACCCGUgg -5'
14575 3' -53.7 NC_003521.1 + 34332 0.66 0.983132
Target:  5'- cGUUGGAAgcgGCgCAgggcggaGGCCGUGaGGC-CCa -3'
miRNA:   3'- uCGACCUUa--UG-GU-------UCGGUAC-CCGuGG- -5'
14575 3' -53.7 NC_003521.1 + 35036 0.72 0.831768
Target:  5'- cGGUUGGGcacGCuCAuGCCGUGcGGCGCCa -3'
miRNA:   3'- -UCGACCUua-UG-GUuCGGUAC-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 35043 0.66 0.983322
Target:  5'- cAGCUGGAccgucgguugGUACUuccagcGGGCCAUGcGGgACg -3'
miRNA:   3'- -UCGACCU----------UAUGG------UUCGGUAC-CCgUGg -5'
14575 3' -53.7 NC_003521.1 + 35141 0.71 0.848019
Target:  5'- uGCUGGccUACCugaCCGUGGGCAUg -3'
miRNA:   3'- uCGACCuuAUGGuucGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 36685 0.66 0.986793
Target:  5'- gAGCUGag--GCCGGGCUcc-GGCGCCu -3'
miRNA:   3'- -UCGACcuuaUGGUUCGGuacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 37704 0.68 0.951097
Target:  5'- cGGCUcgcaGAGUGCCuuuGGCCAgGcGGCGCUg -3'
miRNA:   3'- -UCGAc---CUUAUGGu--UCGGUaC-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 38455 0.66 0.986793
Target:  5'- uGCUGGAGcagGUCGgcGGCCGUGGGacguugACCa -3'
miRNA:   3'- uCGACCUUa--UGGU--UCGGUACCCg-----UGG- -5'
14575 3' -53.7 NC_003521.1 + 38466 0.66 0.983322
Target:  5'- cGuCUGG---GCUcuGGCgGUGGGCGCCg -3'
miRNA:   3'- uC-GACCuuaUGGu-UCGgUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 39404 0.68 0.958825
Target:  5'- cAGCUGGuccuguugGCaCAGGCCGUccagucccguagGcGGCGCCg -3'
miRNA:   3'- -UCGACCuua-----UG-GUUCGGUA------------C-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 39406 0.75 0.64082
Target:  5'- uGUUGGA--GCCGAGUU-UGGGCGCCg -3'
miRNA:   3'- uCGACCUuaUGGUUCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 39439 0.7 0.910879
Target:  5'- cGCUGccg-GCCGAGCCc--GGCGCCg -3'
miRNA:   3'- uCGACcuuaUGGUUCGGuacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 40749 0.69 0.916733
Target:  5'- uGCUGGcgagGCCAAGCCGgcGGUaaGCCa -3'
miRNA:   3'- uCGACCuua-UGGUUCGGUacCCG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.