miRNA display CGI


Results 41 - 60 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 47413 0.73 0.7602
Target:  5'- gAGCUGGAuguagcaucGCuCGGGCCA-GGGCACa -3'
miRNA:   3'- -UCGACCUua-------UG-GUUCGGUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 48894 0.66 0.986793
Target:  5'- cGCUGc----CCAGGCCccGGGgACCa -3'
miRNA:   3'- uCGACcuuauGGUUCGGuaCCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 53954 0.68 0.946892
Target:  5'- gAGCUGGGccgaCGAGCCGUGcuGCACg -3'
miRNA:   3'- -UCGACCUuaugGUUCGGUACc-CGUGg -5'
14575 3' -53.7 NC_003521.1 + 59351 0.69 0.937784
Target:  5'- gAGCUGGGAUG---GGCCGUcuGCGCCg -3'
miRNA:   3'- -UCGACCUUAUgguUCGGUAccCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 64319 0.68 0.953905
Target:  5'- cGCUGGccauGGUacacgagcagaugaGCCAgcugcaGGCCcUGGGCGCCc -3'
miRNA:   3'- uCGACC----UUA--------------UGGU------UCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 65526 0.78 0.510395
Target:  5'- cAGCUGGGcgacGCCGAGaCCGUguucacGGGCACCg -3'
miRNA:   3'- -UCGACCUua--UGGUUC-GGUA------CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 65978 0.66 0.983322
Target:  5'- uGGCUGGAcgugGCCAcGCC--GGaCACCa -3'
miRNA:   3'- -UCGACCUua--UGGUuCGGuaCCcGUGG- -5'
14575 3' -53.7 NC_003521.1 + 66012 0.67 0.96567
Target:  5'- uGCUGGAGaACC---CCguGUGGGCGCUg -3'
miRNA:   3'- uCGACCUUaUGGuucGG--UACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 66315 0.66 0.986793
Target:  5'- cGgaGGugauCCAAGCCGUGGaggcCGCCu -3'
miRNA:   3'- uCgaCCuuauGGUUCGGUACCc---GUGG- -5'
14575 3' -53.7 NC_003521.1 + 71280 0.71 0.870924
Target:  5'- aGGCgGGGGccgcgGCaCGGGCCccugGGGCACCa -3'
miRNA:   3'- -UCGaCCUUa----UG-GUUCGGua--CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 72078 0.66 0.985135
Target:  5'- aGGC-GGAccACCAGGCCGUGcugacCGCCg -3'
miRNA:   3'- -UCGaCCUuaUGGUUCGGUACcc---GUGG- -5'
14575 3' -53.7 NC_003521.1 + 74084 0.7 0.909077
Target:  5'- cAGCUGGugcugGCCGAcaugcugcGCgacugcgcgacgccCAUGGGCGCCg -3'
miRNA:   3'- -UCGACCuua--UGGUU--------CG--------------GUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 77250 0.67 0.968774
Target:  5'- cGGCgggguccacGGggUACUc-GCCGccGGGCACCa -3'
miRNA:   3'- -UCGa--------CCuuAUGGuuCGGUa-CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 77655 0.71 0.86274
Target:  5'- uGUUGGAAcUGCCGucgggagacagcaGGCCGggGGGCACg -3'
miRNA:   3'- uCGACCUU-AUGGU-------------UCGGUa-CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 77959 0.67 0.971673
Target:  5'- uGCUGGGucuuggaGCC-GGCCGcGGGCucGCCg -3'
miRNA:   3'- uCGACCUua-----UGGuUCGGUaCCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 78395 0.68 0.946892
Target:  5'- cGGaCUGGAA-ACCGaaAGCgCGUGGGaGCCa -3'
miRNA:   3'- -UC-GACCUUaUGGU--UCG-GUACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 79057 0.68 0.946892
Target:  5'- uGGCguagGGggU-CCGGGgCucGGGCACCa -3'
miRNA:   3'- -UCGa---CCuuAuGGUUCgGuaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 83217 0.67 0.96567
Target:  5'- cGCUGGggUACaCGGuGCCcucGGcGCACUu -3'
miRNA:   3'- uCGACCuuAUG-GUU-CGGua-CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 86337 0.7 0.910879
Target:  5'- uGCUGGAGgucuUGCCGGcGCCGgcGGUGCCg -3'
miRNA:   3'- uCGACCUU----AUGGUU-CGGUacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 86504 0.66 0.985135
Target:  5'- aAGCguuGAAgucgGCCAugucGCCgAUGGGCACg -3'
miRNA:   3'- -UCGac-CUUa---UGGUu---CGG-UACCCGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.