miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 86755 0.73 0.750655
Target:  5'- aGGCUGGGcaccgagagGCgCGAGagcuugaucuCCAUGGGCACCa -3'
miRNA:   3'- -UCGACCUua-------UG-GUUC----------GGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 87076 0.67 0.971673
Target:  5'- gGGCuguacgUGGAuUGgUggGCCAcggUGGGCAUCg -3'
miRNA:   3'- -UCG------ACCUuAUgGuuCGGU---ACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 87403 0.68 0.958825
Target:  5'- cGGCUGcugcugACCAcGCCgGUGGcGCACCu -3'
miRNA:   3'- -UCGACcuua--UGGUuCGG-UACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 88212 0.69 0.937784
Target:  5'- cGcCUGGug-ACCAA-CCA-GGGCGCCg -3'
miRNA:   3'- uC-GACCuuaUGGUUcGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 88622 0.66 0.986793
Target:  5'- cGGUgaaGGAcgACC-GGCUGUGGGUGCa -3'
miRNA:   3'- -UCGa--CCUuaUGGuUCGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 89162 0.79 0.444681
Target:  5'- -cCUGGAcgGCUggGCCGUGGGCcugGCCc -3'
miRNA:   3'- ucGACCUuaUGGuuCGGUACCCG---UGG- -5'
14575 3' -53.7 NC_003521.1 + 91189 0.67 0.962356
Target:  5'- -uCUGGAagcgGUACCGcgggcgcGUCGUGGGCACa -3'
miRNA:   3'- ucGACCU----UAUGGUu------CGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 93049 0.69 0.927205
Target:  5'- cGCUGGGcuucaacACCGuggugguGGCCAUGGGC-CUg -3'
miRNA:   3'- uCGACCUua-----UGGU-------UCGGUACCCGuGG- -5'
14575 3' -53.7 NC_003521.1 + 93219 0.67 0.962356
Target:  5'- cAGUUcGggUACCA--CC-UGGGCACCu -3'
miRNA:   3'- -UCGAcCuuAUGGUucGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 93320 0.66 0.981347
Target:  5'- cAGCUGGugcuuCgGGGCCGuguuccucaucUGGGcCACCu -3'
miRNA:   3'- -UCGACCuuau-GgUUCGGU-----------ACCC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 95157 0.73 0.769633
Target:  5'- gAGCaGGAAcuCgCGGGCCGaGGGCACCu -3'
miRNA:   3'- -UCGaCCUUauG-GUUCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 95557 0.7 0.891917
Target:  5'- gAGCUGGcc-GCCgAGGCCGagGaGGCGCCc -3'
miRNA:   3'- -UCGACCuuaUGG-UUCGGUa-C-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 97745 0.68 0.942455
Target:  5'- cGGCUGcGAAU-CCGAcguaucGCCAccGGCGCCa -3'
miRNA:   3'- -UCGAC-CUUAuGGUU------CGGUacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 98967 0.72 0.814796
Target:  5'- uGGCUGGugaggcGGUGCCGggAGCCGUaGGCGCg -3'
miRNA:   3'- -UCGACC------UUAUGGU--UCGGUAcCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 99318 0.69 0.937784
Target:  5'- aGGUccgGGAcgaGgCGGGCCAggUGGGCACCu -3'
miRNA:   3'- -UCGa--CCUua-UgGUUCGGU--ACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 101425 0.66 0.981347
Target:  5'- cGGCUGGAAgAgCAGuaCGUuGGGCGCg -3'
miRNA:   3'- -UCGACCUUaUgGUUcgGUA-CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 101779 0.66 0.986793
Target:  5'- cAGCaGGu-UGCgCAGGUCAguUGGGCGCg -3'
miRNA:   3'- -UCGaCCuuAUG-GUUCGGU--ACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 102834 0.67 0.968774
Target:  5'- cGCUGcGAGaAgCGcGCCA-GGGCGCCc -3'
miRNA:   3'- uCGAC-CUUaUgGUuCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 103130 0.66 0.985135
Target:  5'- aGGCUGGuggggaGAGCCcagGGGCAgCa -3'
miRNA:   3'- -UCGACCuuauggUUCGGua-CCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 103865 0.67 0.97688
Target:  5'- aGGCUGGcg-AUCAGcGCCGacagggggaUGGGCuGCCg -3'
miRNA:   3'- -UCGACCuuaUGGUU-CGGU---------ACCCG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.