miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 106112 0.75 0.671333
Target:  5'- gGGCacgGGcGUGgC-GGCCGUGGGCACCu -3'
miRNA:   3'- -UCGa--CCuUAUgGuUCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 106326 0.7 0.875998
Target:  5'- aAGCUGGAggGC--AGCCAuuuguaagggauuuUGGGCugCg -3'
miRNA:   3'- -UCGACCUuaUGguUCGGU--------------ACCCGugG- -5'
14575 3' -53.7 NC_003521.1 + 109418 0.73 0.750655
Target:  5'- cGGCUGcaucaugGCCAggauagacagGGCCGUGGGCACg -3'
miRNA:   3'- -UCGACcuua---UGGU----------UCGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 112063 0.66 0.985135
Target:  5'- uGCUGGAGgacGCC--GCgGUGGGgAUCa -3'
miRNA:   3'- uCGACCUUa--UGGuuCGgUACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 112733 0.75 0.64082
Target:  5'- uGCUGGAGUcgcgcuuccaGCgCGAGcCCAUGGGCGgCa -3'
miRNA:   3'- uCGACCUUA----------UG-GUUC-GGUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 113546 0.75 0.64082
Target:  5'- cGGCgugucGGAcGUGCCGcGCC-UGGGCGCCa -3'
miRNA:   3'- -UCGa----CCU-UAUGGUuCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 113741 0.67 0.962356
Target:  5'- gGGCUGGGccGCCucucgucgguGGCCcUGcccGGCACCg -3'
miRNA:   3'- -UCGACCUuaUGGu---------UCGGuAC---CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 113846 0.67 0.968774
Target:  5'- uGCUGGggUuucuuCCGAGC-GUGGcggugguguaaGCGCCg -3'
miRNA:   3'- uCGACCuuAu----GGUUCGgUACC-----------CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 113976 0.66 0.983322
Target:  5'- cGGCaGGcg-GCC-GGCC--GGGCACCg -3'
miRNA:   3'- -UCGaCCuuaUGGuUCGGuaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 114038 0.68 0.958825
Target:  5'- gAGCUGGAccacGCgCAGcGCCA-GGGCcuGCCg -3'
miRNA:   3'- -UCGACCUua--UG-GUU-CGGUaCCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 114589 0.68 0.952715
Target:  5'- gGGCgUGGAccugacuaucaagauGUGgUucGUCAUGGGCGCCc -3'
miRNA:   3'- -UCG-ACCU---------------UAUgGuuCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 118697 0.68 0.942455
Target:  5'- cGCUGGuggagGgCAGGCuCAUGGGCGa- -3'
miRNA:   3'- uCGACCuua--UgGUUCG-GUACCCGUgg -5'
14575 3' -53.7 NC_003521.1 + 119624 0.67 0.974372
Target:  5'- cAGgUGGAcguuUACCcacuGGCCGcGGGCGuCCg -3'
miRNA:   3'- -UCgACCUu---AUGGu---UCGGUaCCCGU-GG- -5'
14575 3' -53.7 NC_003521.1 + 119759 0.77 0.549719
Target:  5'- cAGCUGGAGUACC-AGCaCAccUGGG-ACCg -3'
miRNA:   3'- -UCGACCUUAUGGuUCG-GU--ACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 120722 0.68 0.951097
Target:  5'- uGGCccUGGA---CCGuGGCCAccagGGGCACCa -3'
miRNA:   3'- -UCG--ACCUuauGGU-UCGGUa---CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 121368 0.68 0.942455
Target:  5'- cGGCUuGAugACCAGGCUcuUGGGgGCCa -3'
miRNA:   3'- -UCGAcCUuaUGGUUCGGu-ACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 121902 0.68 0.958825
Target:  5'- uGGCUGGGGcagaugGCCcGGCCcGUGGGguugugcacguuCACCg -3'
miRNA:   3'- -UCGACCUUa-----UGGuUCGG-UACCC------------GUGG- -5'
14575 3' -53.7 NC_003521.1 + 122714 0.72 0.797166
Target:  5'- gGGCUGGAGgcgguCguGGUCGUGGGCgacggcGCCg -3'
miRNA:   3'- -UCGACCUUau---GguUCGGUACCCG------UGG- -5'
14575 3' -53.7 NC_003521.1 + 126545 0.75 0.64082
Target:  5'- cAGCUGuGGUACUcgugcgcgaAGGCCGUGGGCAgCg -3'
miRNA:   3'- -UCGACcUUAUGG---------UUCGGUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 128912 0.69 0.937784
Target:  5'- cGCUGG-AUGCgguugaGGGCC-UGGcGCGCCa -3'
miRNA:   3'- uCGACCuUAUGg-----UUCGGuACC-CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.