Results 101 - 120 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 128977 | 0.68 | 0.946892 |
Target: 5'- cGCUGGAAaaagACgAuGC--UGGGCACCa -3' miRNA: 3'- uCGACCUUa---UGgUuCGguACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 129017 | 0.69 | 0.932877 |
Target: 5'- cGCUGGc--GCC--GCCAgaGGGCACCc -3' miRNA: 3'- uCGACCuuaUGGuuCGGUa-CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 130164 | 0.78 | 0.520123 |
Target: 5'- cGCUGGccgACCGGGCCGUGaccgugccGGCGCCc -3' miRNA: 3'- uCGACCuuaUGGUUCGGUAC--------CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 130260 | 0.67 | 0.971673 |
Target: 5'- gAGgUGGAcgACUA---CGUGGGCGCCc -3' miRNA: 3'- -UCgACCUuaUGGUucgGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 130370 | 0.7 | 0.90479 |
Target: 5'- gAGCaGGAAUuCCuccCCcUGGGCACCa -3' miRNA: 3'- -UCGaCCUUAuGGuucGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 130405 | 0.68 | 0.958825 |
Target: 5'- uGCUGGAGUugCAgaagcucuggcuGGgCGUGGaGUAUCa -3' miRNA: 3'- uCGACCUUAugGU------------UCgGUACC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 131853 | 0.67 | 0.972776 |
Target: 5'- gGGCUGGuucaaggcgGCCAcGGCCAUcgugccgcgcgugucGGGCAgCg -3' miRNA: 3'- -UCGACCuua------UGGU-UCGGUA---------------CCCGUgG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 134590 | 0.68 | 0.951097 |
Target: 5'- aGGCUGaGGAUGgaGacGGCCAUGuGCGCCg -3' miRNA: 3'- -UCGAC-CUUAUggU--UCGGUACcCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 134741 | 0.7 | 0.903544 |
Target: 5'- cAGCUacaacuuCCAGGCCAUcuuuccGGGCACCa -3' miRNA: 3'- -UCGAccuuau-GGUUCGGUA------CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 136117 | 0.66 | 0.983322 |
Target: 5'- gGGaCUGGuGUACgAGGCgcucuacccCGUGGcGCGCCg -3' miRNA: 3'- -UC-GACCuUAUGgUUCG---------GUACC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 136615 | 0.66 | 0.986793 |
Target: 5'- cGCUGGGcUGCagCAgcacguaaucGGCCAcGGGCGCg -3' miRNA: 3'- uCGACCUuAUG--GU----------UCGGUaCCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 137522 | 0.73 | 0.73712 |
Target: 5'- uGCUGGAGUACCGgcgcgugguGGCCuacgacgagacGGCGCCg -3' miRNA: 3'- uCGACCUUAUGGU---------UCGGuac--------CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 141260 | 0.72 | 0.823368 |
Target: 5'- cAGUUcGAc-GCCAAcaacGCCAUGGGCACCu -3' miRNA: 3'- -UCGAcCUuaUGGUU----CGGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 144115 | 0.67 | 0.96567 |
Target: 5'- uGCUGGAccGCCGcGGCCuggacgaGGuGCGCCu -3' miRNA: 3'- uCGACCUuaUGGU-UCGGua-----CC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 145033 | 0.69 | 0.932877 |
Target: 5'- cGCUGGAucGCguGGCCGaGcGGCACg -3' miRNA: 3'- uCGACCUuaUGguUCGGUaC-CCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 148353 | 0.68 | 0.955074 |
Target: 5'- aGGCUGGGAgACCcccgagcgggcAAGCCGagcgGGGUGCg -3' miRNA: 3'- -UCGACCUUaUGG-----------UUCGGUa---CCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 148632 | 0.66 | 0.981347 |
Target: 5'- gGGCgggGGAGggg-AGGCCA-GGGCAUCg -3' miRNA: 3'- -UCGa--CCUUauggUUCGGUaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 148713 | 0.69 | 0.922352 |
Target: 5'- cGCacccgGGggUuCCGA-CCcgGGGCACCg -3' miRNA: 3'- uCGa----CCuuAuGGUUcGGuaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 149157 | 0.72 | 0.814796 |
Target: 5'- cGCUgcGGAAUgcGCCAgggAGCCGcGGGCACg -3' miRNA: 3'- uCGA--CCUUA--UGGU---UCGGUaCCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 149441 | 0.69 | 0.922352 |
Target: 5'- gGGUcgGGggU-CCGGGCCcgGGGUucgGCCc -3' miRNA: 3'- -UCGa-CCuuAuGGUUCGGuaCCCG---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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