miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 239631 0.68 0.958825
Target:  5'- cAGCUGGuccuguugGCaCAGGCCGUccagucccguagGcGGCGCCg -3'
miRNA:   3'- -UCGACCuua-----UG-GUUCGGUA------------C-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 238682 0.66 0.986793
Target:  5'- uGCUGGAGcagGUCGgcGGCCGUGGGacguugACCa -3'
miRNA:   3'- uCGACCUUa--UGGU--UCGGUACCCg-----UGG- -5'
14575 3' -53.7 NC_003521.1 + 238008 0.66 0.983132
Target:  5'- cGGCUGGGucGCCAGucuucgucaucgcGUCGUaGGGC-CCg -3'
miRNA:   3'- -UCGACCUuaUGGUU-------------CGGUA-CCCGuGG- -5'
14575 3' -53.7 NC_003521.1 + 237722 0.75 0.64082
Target:  5'- gGGCUGGAugaACCcggGGGCCAUGugaGGUACCa -3'
miRNA:   3'- -UCGACCUua-UGG---UUCGGUAC---CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 234758 0.68 0.946892
Target:  5'- cGGCUGGcGUgaucacgcccuGCgGGGCCGcugGGGCACg -3'
miRNA:   3'- -UCGACCuUA-----------UGgUUCGGUa--CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 234053 0.66 0.979203
Target:  5'- cGGCaUGGuacuCCuGGCCAUGGaCGCCc -3'
miRNA:   3'- -UCG-ACCuuauGGuUCGGUACCcGUGG- -5'
14575 3' -53.7 NC_003521.1 + 227583 0.68 0.946892
Target:  5'- uAGgaGGAcggaugaggcAUGgCAGGCU-UGGGCGCCg -3'
miRNA:   3'- -UCgaCCU----------UAUgGUUCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 226378 0.68 0.958825
Target:  5'- cGGCUGacgccGCCGcagGGCCGUGuGCACCa -3'
miRNA:   3'- -UCGACcuua-UGGU---UCGGUACcCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 225687 0.66 0.985135
Target:  5'- cGUUGGggU-CCAGGCgCucccaGGCGCCc -3'
miRNA:   3'- uCGACCuuAuGGUUCG-Guac--CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 225114 0.66 0.981347
Target:  5'- uGC-GGGAUGCCGAGCgAca-GCACCu -3'
miRNA:   3'- uCGaCCUUAUGGUUCGgUaccCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 225068 0.68 0.958825
Target:  5'- uAGCUcGGGcAUGCUgcuGCCcgGGcGCACCu -3'
miRNA:   3'- -UCGA-CCU-UAUGGuu-CGGuaCC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 224586 0.67 0.964699
Target:  5'- aGGCUGaGGUacauuucgcacucgGCCAGGCgGcaGGGCGCCg -3'
miRNA:   3'- -UCGACcUUA--------------UGGUUCGgUa-CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 223775 0.67 0.96567
Target:  5'- cGCUGucggcGCCGuuaccGCCGUGGGcCGCCa -3'
miRNA:   3'- uCGACcuua-UGGUu----CGGUACCC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 223390 0.67 0.974372
Target:  5'- cGGCgccccgACgCGGGCCGUGuGGCGCCc -3'
miRNA:   3'- -UCGaccuuaUG-GUUCGGUAC-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 220277 0.72 0.813062
Target:  5'- uGCUGGggUGCUcguugcccagcguauAGGCCAcgaacaugcacacgaUGGGgACCa -3'
miRNA:   3'- uCGACCuuAUGG---------------UUCGGU---------------ACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 218461 0.73 0.769633
Target:  5'- uGGCcGGc--ACCAcGCCGUGGGCGCa -3'
miRNA:   3'- -UCGaCCuuaUGGUuCGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 217368 0.75 0.681452
Target:  5'- uGCUGuGuaacacgGCCAGGCacacCGUGGGCACCg -3'
miRNA:   3'- uCGAC-Cuua----UGGUUCG----GUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 216878 0.68 0.946892
Target:  5'- gAGCgGGAcauCCAGGCCAUccaGGcCACCa -3'
miRNA:   3'- -UCGaCCUuauGGUUCGGUAc--CC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 216111 0.68 0.958825
Target:  5'- -cCUGGGgugacgacAUACCcuGAGUCAUGGGUAUCc -3'
miRNA:   3'- ucGACCU--------UAUGG--UUCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 215559 0.68 0.951097
Target:  5'- -aCUGGuacACCAGGCCAgGGaccGCGCCg -3'
miRNA:   3'- ucGACCuuaUGGUUCGGUaCC---CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.