miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 215453 0.73 0.741006
Target:  5'- uGCUGGc--GCCAGGCCGaGGGaGCCa -3'
miRNA:   3'- uCGACCuuaUGGUUCGGUaCCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 215381 0.69 0.916733
Target:  5'- aGGCagaGGAcgGCCAGGaa--GGGCACCa -3'
miRNA:   3'- -UCGa--CCUuaUGGUUCgguaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 213713 0.78 0.510395
Target:  5'- gGGCcucgGGGAUGCCcAGCCAgacGGCGCCg -3'
miRNA:   3'- -UCGa---CCUUAUGGuUCGGUac-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 213286 0.71 0.870924
Target:  5'- cGgUGGAG-ACCGucuacGCCAccgUGGGCGCCu -3'
miRNA:   3'- uCgACCUUaUGGUu----CGGU---ACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 212284 0.69 0.922352
Target:  5'- aGGCUGGccaggGCgaAGGCCGgcaUGGGCACg -3'
miRNA:   3'- -UCGACCuua--UGg-UUCGGU---ACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 212150 0.66 0.986634
Target:  5'- cGGCguaggucgGGAaccagagGUGCgAGGUUagGGGCACCa -3'
miRNA:   3'- -UCGa-------CCU-------UAUGgUUCGGuaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 210407 0.67 0.971673
Target:  5'- cAGCUGGG--ACCGcAGCguggucggCGUGGGCGgCg -3'
miRNA:   3'- -UCGACCUuaUGGU-UCG--------GUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 207737 0.71 0.851178
Target:  5'- uGGCUGGAgcccGUGCagaAGGCCAucuucauggacccgcUGGGCGgCa -3'
miRNA:   3'- -UCGACCU----UAUGg--UUCGGU---------------ACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 201765 0.74 0.69153
Target:  5'- gAGCUGGAAaACUacGAGCCGUucgccucGGCGCCa -3'
miRNA:   3'- -UCGACCUUaUGG--UUCGGUAc------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 201439 0.66 0.985135
Target:  5'- cAGCUG---UACCuGGCCcUGGGCGUCa -3'
miRNA:   3'- -UCGACcuuAUGGuUCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 201115 1.13 0.003681
Target:  5'- gAGCUGGAAUACCAAGCCAUGGGCACCa -3'
miRNA:   3'- -UCGACCUUAUGGUUCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 200991 0.66 0.979203
Target:  5'- cGCcGGAG-GCCAAGCa---GGCGCCa -3'
miRNA:   3'- uCGaCCUUaUGGUUCGguacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 200316 0.74 0.725376
Target:  5'- uGCUGGAGgaguucgagaugcgcUGCgGcGCCGUGGcGCGCCg -3'
miRNA:   3'- uCGACCUU---------------AUGgUuCGGUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 198248 0.67 0.974111
Target:  5'- uAGCUGGcuGAcGCCGcagcgauAGCCGUcccaGcGGCACCa -3'
miRNA:   3'- -UCGACC--UUaUGGU-------UCGGUA----C-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 197324 0.7 0.898469
Target:  5'- -uCUGGucgGCCAGGCCcUGGGCGa- -3'
miRNA:   3'- ucGACCuuaUGGUUCGGuACCCGUgg -5'
14575 3' -53.7 NC_003521.1 + 196951 0.72 0.823368
Target:  5'- uAGCgUGGGcgacgGCCcggGAGCCGgccgGGGCGCCu -3'
miRNA:   3'- -UCG-ACCUua---UGG---UUCGGUa---CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 193213 0.67 0.974372
Target:  5'- cGcCUGGAcgauggcgGCCAAGUCGggcgGGaGCGCCu -3'
miRNA:   3'- uC-GACCUua------UGGUUCGGUa---CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 191389 0.7 0.878141
Target:  5'- cGGCgUGGAggACCAGGCuCAUGGGauaguguCCc -3'
miRNA:   3'- -UCG-ACCUuaUGGUUCG-GUACCCgu-----GG- -5'
14575 3' -53.7 NC_003521.1 + 190976 0.66 0.986311
Target:  5'- uGCUGGAcgagGCCGAGCggcagCAggcgcagguggacgUGGGCAgCCu -3'
miRNA:   3'- uCGACCUua--UGGUUCG-----GU--------------ACCCGU-GG- -5'
14575 3' -53.7 NC_003521.1 + 188688 0.7 0.891917
Target:  5'- gGGCggGGGAUACgCGGGUCccGuGGCGCCc -3'
miRNA:   3'- -UCGa-CCUUAUG-GUUCGGuaC-CCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.