miRNA display CGI


Results 41 - 60 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 187058 0.68 0.958825
Target:  5'- gGGCgGGAaggGUGCCAgcgAGCgGaGGGCGCg -3'
miRNA:   3'- -UCGaCCU---UAUGGU---UCGgUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 185336 0.66 0.981347
Target:  5'- uGGCUGGAGcACCAGGaggaCGgcaagGcGGCGCa -3'
miRNA:   3'- -UCGACCUUaUGGUUCg---GUa----C-CCGUGg -5'
14575 3' -53.7 NC_003521.1 + 185124 0.66 0.981552
Target:  5'- uGCUGGAGcacgggaugcgcaacUGCCAguuccucucgguggGGCCcgacgacgagGUGGcGCACCu -3'
miRNA:   3'- uCGACCUU---------------AUGGU--------------UCGG----------UACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 184173 0.67 0.974372
Target:  5'- gAGCgGGAGgugcACCGGcCCGUGGuGCGCUu -3'
miRNA:   3'- -UCGaCCUUa---UGGUUcGGUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 181904 0.67 0.971673
Target:  5'- --gUGGuAUACCAGGUCA-GGGCucCCa -3'
miRNA:   3'- ucgACCuUAUGGUUCGGUaCCCGu-GG- -5'
14575 3' -53.7 NC_003521.1 + 181294 0.7 0.898469
Target:  5'- cAGCcgGGAAgagaagcucagGCCGcccgcgGGCCA-GGGCGCCg -3'
miRNA:   3'- -UCGa-CCUUa----------UGGU------UCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 179468 0.7 0.910879
Target:  5'- uGCaGGAAg--CGGGCCGUGGGCAg- -3'
miRNA:   3'- uCGaCCUUaugGUUCGGUACCCGUgg -5'
14575 3' -53.7 NC_003521.1 + 178674 0.68 0.942455
Target:  5'- cGCUGGAAcACCGgguggucgcGGCCGcucaGGUACCa -3'
miRNA:   3'- uCGACCUUaUGGU---------UCGGUac--CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 177803 0.71 0.839988
Target:  5'- cGCUGGuggGC---GUCGUGGGCGCCg -3'
miRNA:   3'- uCGACCuuaUGguuCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 174213 0.67 0.97688
Target:  5'- cGUUGGggUcGCgCGGGUCGggcagGGGCGCg -3'
miRNA:   3'- uCGACCuuA-UG-GUUCGGUa----CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 173592 0.79 0.453786
Target:  5'- uGCUGGuc--CCAGGCCAUGaGCACCa -3'
miRNA:   3'- uCGACCuuauGGUUCGGUACcCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 171301 0.69 0.927733
Target:  5'- gGGCUGGAaggcgGUGCUggGCCucaacgcGGccuGCGCCg -3'
miRNA:   3'- -UCGACCU-----UAUGGuuCGGua-----CC---CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 170094 0.68 0.946892
Target:  5'- cAGCUGGAcgaaGUGCCGguacauccGGCgCA--GGCGCCg -3'
miRNA:   3'- -UCGACCU----UAUGGU--------UCG-GUacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 168930 0.71 0.848019
Target:  5'- uGCgUGGAGUACCugcuGAGCUAcUGGGagaGCCg -3'
miRNA:   3'- uCG-ACCUUAUGG----UUCGGU-ACCCg--UGG- -5'
14575 3' -53.7 NC_003521.1 + 167374 0.69 0.937784
Target:  5'- uGCUGGGuacagAUAUCGAGCgAcgcGGGCACg -3'
miRNA:   3'- uCGACCU-----UAUGGUUCGgUa--CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 166226 0.69 0.937784
Target:  5'- cAGCUGGuagaagagcguGAUGCCGcccggcgagcgGGCCGUgcucacGGGCACg -3'
miRNA:   3'- -UCGACC-----------UUAUGGU-----------UCGGUA------CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 165446 0.71 0.855857
Target:  5'- gGGCgaGGggUGgCAGGCCuUGaGCACCa -3'
miRNA:   3'- -UCGa-CCuuAUgGUUCGGuACcCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 160306 0.72 0.788125
Target:  5'- aGGCggugGGcAcgGCCAucggAGCCGUGGGCGgCg -3'
miRNA:   3'- -UCGa---CC-UuaUGGU----UCGGUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 157250 0.66 0.987415
Target:  5'- cGGCUGac-UACCAAGCuCAucgacgucaaccuggUGGGCcCCg -3'
miRNA:   3'- -UCGACcuuAUGGUUCG-GU---------------ACCCGuGG- -5'
14575 3' -53.7 NC_003521.1 + 155386 0.75 0.671333
Target:  5'- cGGCgcGGAcgACgAGGCCGgcggggggcUGGGCACCg -3'
miRNA:   3'- -UCGa-CCUuaUGgUUCGGU---------ACCCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.