miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 155289 0.66 0.981347
Target:  5'- cGCUGGG----CAAcGCCAUGGGCuuCg -3'
miRNA:   3'- uCGACCUuaugGUU-CGGUACCCGugG- -5'
14575 3' -53.7 NC_003521.1 + 152587 0.7 0.878141
Target:  5'- uAGUUGGAGUACaCGauGGCCuccucGGCGCCc -3'
miRNA:   3'- -UCGACCUUAUG-GU--UCGGuac--CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 152273 0.67 0.971673
Target:  5'- cAGCUGGugcccUGCCccgaggAGGCCGUuucGGuGCGCCu -3'
miRNA:   3'- -UCGACCuu---AUGG------UUCGGUA---CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 150513 0.68 0.946892
Target:  5'- cGGCgGGGcccUGCUaggagcggGAGCCGUGGGguCCg -3'
miRNA:   3'- -UCGaCCUu--AUGG--------UUCGGUACCCguGG- -5'
14575 3' -53.7 NC_003521.1 + 149441 0.69 0.922352
Target:  5'- gGGUcgGGggU-CCGGGCCcgGGGUucgGCCc -3'
miRNA:   3'- -UCGa-CCuuAuGGUUCGGuaCCCG---UGG- -5'
14575 3' -53.7 NC_003521.1 + 149157 0.72 0.814796
Target:  5'- cGCUgcGGAAUgcGCCAgggAGCCGcGGGCACg -3'
miRNA:   3'- uCGA--CCUUA--UGGU---UCGGUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 148713 0.69 0.922352
Target:  5'- cGCacccgGGggUuCCGA-CCcgGGGCACCg -3'
miRNA:   3'- uCGa----CCuuAuGGUUcGGuaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 148632 0.66 0.981347
Target:  5'- gGGCgggGGAGggg-AGGCCA-GGGCAUCg -3'
miRNA:   3'- -UCGa--CCUUauggUUCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 148353 0.68 0.955074
Target:  5'- aGGCUGGGAgACCcccgagcgggcAAGCCGagcgGGGUGCg -3'
miRNA:   3'- -UCGACCUUaUGG-----------UUCGGUa---CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 145033 0.69 0.932877
Target:  5'- cGCUGGAucGCguGGCCGaGcGGCACg -3'
miRNA:   3'- uCGACCUuaUGguUCGGUaC-CCGUGg -5'
14575 3' -53.7 NC_003521.1 + 144115 0.67 0.96567
Target:  5'- uGCUGGAccGCCGcGGCCuggacgaGGuGCGCCu -3'
miRNA:   3'- uCGACCUuaUGGU-UCGGua-----CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 141260 0.72 0.823368
Target:  5'- cAGUUcGAc-GCCAAcaacGCCAUGGGCACCu -3'
miRNA:   3'- -UCGAcCUuaUGGUU----CGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 137522 0.73 0.73712
Target:  5'- uGCUGGAGUACCGgcgcgugguGGCCuacgacgagacGGCGCCg -3'
miRNA:   3'- uCGACCUUAUGGU---------UCGGuac--------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 136615 0.66 0.986793
Target:  5'- cGCUGGGcUGCagCAgcacguaaucGGCCAcGGGCGCg -3'
miRNA:   3'- uCGACCUuAUG--GU----------UCGGUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 136117 0.66 0.983322
Target:  5'- gGGaCUGGuGUACgAGGCgcucuacccCGUGGcGCGCCg -3'
miRNA:   3'- -UC-GACCuUAUGgUUCG---------GUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 134741 0.7 0.903544
Target:  5'- cAGCUacaacuuCCAGGCCAUcuuuccGGGCACCa -3'
miRNA:   3'- -UCGAccuuau-GGUUCGGUA------CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 134590 0.68 0.951097
Target:  5'- aGGCUGaGGAUGgaGacGGCCAUGuGCGCCg -3'
miRNA:   3'- -UCGAC-CUUAUggU--UCGGUACcCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 131853 0.67 0.972776
Target:  5'- gGGCUGGuucaaggcgGCCAcGGCCAUcgugccgcgcgugucGGGCAgCg -3'
miRNA:   3'- -UCGACCuua------UGGU-UCGGUA---------------CCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 130405 0.68 0.958825
Target:  5'- uGCUGGAGUugCAgaagcucuggcuGGgCGUGGaGUAUCa -3'
miRNA:   3'- uCGACCUUAugGU------------UCgGUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 130370 0.7 0.90479
Target:  5'- gAGCaGGAAUuCCuccCCcUGGGCACCa -3'
miRNA:   3'- -UCGaCCUUAuGGuucGGuACCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.