Results 81 - 100 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 130260 | 0.67 | 0.971673 |
Target: 5'- gAGgUGGAcgACUA---CGUGGGCGCCc -3' miRNA: 3'- -UCgACCUuaUGGUucgGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 130164 | 0.78 | 0.520123 |
Target: 5'- cGCUGGccgACCGGGCCGUGaccgugccGGCGCCc -3' miRNA: 3'- uCGACCuuaUGGUUCGGUAC--------CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 129017 | 0.69 | 0.932877 |
Target: 5'- cGCUGGc--GCC--GCCAgaGGGCACCc -3' miRNA: 3'- uCGACCuuaUGGuuCGGUa-CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 128977 | 0.68 | 0.946892 |
Target: 5'- cGCUGGAAaaagACgAuGC--UGGGCACCa -3' miRNA: 3'- uCGACCUUa---UGgUuCGguACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 128912 | 0.69 | 0.937784 |
Target: 5'- cGCUGG-AUGCgguugaGGGCC-UGGcGCGCCa -3' miRNA: 3'- uCGACCuUAUGg-----UUCGGuACC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 126545 | 0.75 | 0.64082 |
Target: 5'- cAGCUGuGGUACUcgugcgcgaAGGCCGUGGGCAgCg -3' miRNA: 3'- -UCGACcUUAUGG---------UUCGGUACCCGUgG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 122714 | 0.72 | 0.797166 |
Target: 5'- gGGCUGGAGgcgguCguGGUCGUGGGCgacggcGCCg -3' miRNA: 3'- -UCGACCUUau---GguUCGGUACCCG------UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 121902 | 0.68 | 0.958825 |
Target: 5'- uGGCUGGGGcagaugGCCcGGCCcGUGGGguugugcacguuCACCg -3' miRNA: 3'- -UCGACCUUa-----UGGuUCGG-UACCC------------GUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 121368 | 0.68 | 0.942455 |
Target: 5'- cGGCUuGAugACCAGGCUcuUGGGgGCCa -3' miRNA: 3'- -UCGAcCUuaUGGUUCGGu-ACCCgUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 120722 | 0.68 | 0.951097 |
Target: 5'- uGGCccUGGA---CCGuGGCCAccagGGGCACCa -3' miRNA: 3'- -UCG--ACCUuauGGU-UCGGUa---CCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 119759 | 0.77 | 0.549719 |
Target: 5'- cAGCUGGAGUACC-AGCaCAccUGGG-ACCg -3' miRNA: 3'- -UCGACCUUAUGGuUCG-GU--ACCCgUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 119624 | 0.67 | 0.974372 |
Target: 5'- cAGgUGGAcguuUACCcacuGGCCGcGGGCGuCCg -3' miRNA: 3'- -UCgACCUu---AUGGu---UCGGUaCCCGU-GG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 118697 | 0.68 | 0.942455 |
Target: 5'- cGCUGGuggagGgCAGGCuCAUGGGCGa- -3' miRNA: 3'- uCGACCuua--UgGUUCG-GUACCCGUgg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 114589 | 0.68 | 0.952715 |
Target: 5'- gGGCgUGGAccugacuaucaagauGUGgUucGUCAUGGGCGCCc -3' miRNA: 3'- -UCG-ACCU---------------UAUgGuuCGGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 114038 | 0.68 | 0.958825 |
Target: 5'- gAGCUGGAccacGCgCAGcGCCA-GGGCcuGCCg -3' miRNA: 3'- -UCGACCUua--UG-GUU-CGGUaCCCG--UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 113976 | 0.66 | 0.983322 |
Target: 5'- cGGCaGGcg-GCC-GGCC--GGGCACCg -3' miRNA: 3'- -UCGaCCuuaUGGuUCGGuaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 113846 | 0.67 | 0.968774 |
Target: 5'- uGCUGGggUuucuuCCGAGC-GUGGcggugguguaaGCGCCg -3' miRNA: 3'- uCGACCuuAu----GGUUCGgUACC-----------CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 113741 | 0.67 | 0.962356 |
Target: 5'- gGGCUGGGccGCCucucgucgguGGCCcUGcccGGCACCg -3' miRNA: 3'- -UCGACCUuaUGGu---------UCGGuAC---CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 113546 | 0.75 | 0.64082 |
Target: 5'- cGGCgugucGGAcGUGCCGcGCC-UGGGCGCCa -3' miRNA: 3'- -UCGa----CCU-UAUGGUuCGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 112733 | 0.75 | 0.64082 |
Target: 5'- uGCUGGAGUcgcgcuuccaGCgCGAGcCCAUGGGCGgCa -3' miRNA: 3'- uCGACCUUA----------UG-GUUC-GGUACCCGUgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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