miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 152587 0.7 0.878141
Target:  5'- uAGUUGGAGUACaCGauGGCCuccucGGCGCCc -3'
miRNA:   3'- -UCGACCUUAUG-GU--UCGGuac--CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 27379 0.73 0.769633
Target:  5'- cAGCcGGGggGCCAGGCCAcGGGgAUCu -3'
miRNA:   3'- -UCGaCCUuaUGGUUCGGUaCCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 218461 0.73 0.769633
Target:  5'- uGGCcGGc--ACCAcGCCGUGGGCGCa -3'
miRNA:   3'- -UCGaCCuuaUGGUuCGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 220277 0.72 0.813062
Target:  5'- uGCUGGggUGCUcguugcccagcguauAGGCCAcgaacaugcacacgaUGGGgACCa -3'
miRNA:   3'- uCGACCuuAUGG---------------UUCGGU---------------ACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 35036 0.72 0.831768
Target:  5'- cGGUUGGGcacGCuCAuGCCGUGcGGCGCCa -3'
miRNA:   3'- -UCGACCUua-UG-GUuCGGUAC-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 165446 0.71 0.855857
Target:  5'- gGGCgaGGggUGgCAGGCCuUGaGCACCa -3'
miRNA:   3'- -UCGa-CCuuAUgGUUCGGuACcCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 77655 0.71 0.86274
Target:  5'- uGUUGGAAcUGCCGucgggagacagcaGGCCGggGGGCACg -3'
miRNA:   3'- uCGACCUU-AUGGU-------------UCGGUa-CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 71280 0.71 0.870924
Target:  5'- aGGCgGGGGccgcgGCaCGGGCCccugGGGCACCa -3'
miRNA:   3'- -UCGaCCUUa----UG-GUUCGGua--CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 106326 0.7 0.875998
Target:  5'- aAGCUGGAggGC--AGCCAuuuguaagggauuuUGGGCugCg -3'
miRNA:   3'- -UCGACCUuaUGguUCGGU--------------ACCCGugG- -5'
14575 3' -53.7 NC_003521.1 + 47413 0.73 0.7602
Target:  5'- gAGCUGGAuguagcaucGCuCGGGCCA-GGGCACa -3'
miRNA:   3'- -UCGACCUua-------UG-GUUCGGUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 109418 0.73 0.750655
Target:  5'- cGGCUGcaucaugGCCAggauagacagGGCCGUGGGCACg -3'
miRNA:   3'- -UCGACcuua---UGGU----------UCGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 86755 0.73 0.750655
Target:  5'- aGGCUGGGcaccgagagGCgCGAGagcuugaucuCCAUGGGCACCa -3'
miRNA:   3'- -UCGACCUua-------UG-GUUC----------GGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 65526 0.78 0.510395
Target:  5'- cAGCUGGGcgacGCCGAGaCCGUguucacGGGCACCg -3'
miRNA:   3'- -UCGACCUua--UGGUUC-GGUA------CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 213713 0.78 0.510395
Target:  5'- gGGCcucgGGGAUGCCcAGCCAgacGGCGCCg -3'
miRNA:   3'- -UCGa---CCUUAUGGuUCGGUac-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 39406 0.75 0.64082
Target:  5'- uGUUGGA--GCCGAGUU-UGGGCGCCg -3'
miRNA:   3'- uCGACCUuaUGGUUCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 237722 0.75 0.64082
Target:  5'- gGGCUGGAugaACCcggGGGCCAUGugaGGUACCa -3'
miRNA:   3'- -UCGACCUua-UGG---UUCGGUAC---CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 126545 0.75 0.64082
Target:  5'- cAGCUGuGGUACUcgugcgcgaAGGCCGUGGGCAgCg -3'
miRNA:   3'- -UCGACcUUAUGG---------UUCGGUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 217368 0.75 0.681452
Target:  5'- uGCUGuGuaacacgGCCAGGCacacCGUGGGCACCg -3'
miRNA:   3'- uCGAC-Cuua----UGGUUCG----GUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 201765 0.74 0.69153
Target:  5'- gAGCUGGAAaACUacGAGCCGUucgccucGGCGCCa -3'
miRNA:   3'- -UCGACCUUaUGG--UUCGGUAc------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 215453 0.73 0.741006
Target:  5'- uGCUGGc--GCCAGGCCGaGGGaGCCa -3'
miRNA:   3'- uCGACCuuaUGGUUCGGUaCCCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.