Results 81 - 100 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 114589 | 0.68 | 0.952715 |
Target: 5'- gGGCgUGGAccugacuaucaagauGUGgUucGUCAUGGGCGCCc -3' miRNA: 3'- -UCG-ACCU---------------UAUgGuuCGGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 118697 | 0.68 | 0.942455 |
Target: 5'- cGCUGGuggagGgCAGGCuCAUGGGCGa- -3' miRNA: 3'- uCGACCuua--UgGUUCG-GUACCCGUgg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 121368 | 0.68 | 0.942455 |
Target: 5'- cGGCUuGAugACCAGGCUcuUGGGgGCCa -3' miRNA: 3'- -UCGAcCUuaUGGUUCGGu-ACCCgUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 181294 | 0.7 | 0.898469 |
Target: 5'- cAGCcgGGAAgagaagcucagGCCGcccgcgGGCCA-GGGCGCCg -3' miRNA: 3'- -UCGa-CCUUa----------UGGU------UCGGUaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 74084 | 0.7 | 0.909077 |
Target: 5'- cAGCUGGugcugGCCGAcaugcugcGCgacugcgcgacgccCAUGGGCGCCg -3' miRNA: 3'- -UCGACCuua--UGGUU--------CG--------------GUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 39439 | 0.7 | 0.910879 |
Target: 5'- cGCUGccg-GCCGAGCCc--GGCGCCg -3' miRNA: 3'- uCGACcuuaUGGUUCGGuacCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 427 | 0.69 | 0.916733 |
Target: 5'- uGCUGGcgagGCCAAGCCGgcGGUaaGCCa -3' miRNA: 3'- uCGACCuua-UGGUUCGGUacCCG--UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 30949 | 0.69 | 0.916733 |
Target: 5'- cGUaGGuAGUGCCAAGCCA--GGCGCUc -3' miRNA: 3'- uCGaCC-UUAUGGUUCGGUacCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 215381 | 0.69 | 0.916733 |
Target: 5'- aGGCagaGGAcgGCCAGGaa--GGGCACCa -3' miRNA: 3'- -UCGa--CCUuaUGGUUCgguaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 145033 | 0.69 | 0.932877 |
Target: 5'- cGCUGGAucGCguGGCCGaGcGGCACg -3' miRNA: 3'- uCGACCUuaUGguUCGGUaC-CCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 128912 | 0.69 | 0.937784 |
Target: 5'- cGCUGG-AUGCgguugaGGGCC-UGGcGCGCCa -3' miRNA: 3'- uCGACCuUAUGg-----UUCGGuACC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 166226 | 0.69 | 0.937784 |
Target: 5'- cAGCUGGuagaagagcguGAUGCCGcccggcgagcgGGCCGUgcucacGGGCACg -3' miRNA: 3'- -UCGACC-----------UUAUGGU-----------UCGGUA------CCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 167374 | 0.69 | 0.937784 |
Target: 5'- uGCUGGGuacagAUAUCGAGCgAcgcGGGCACg -3' miRNA: 3'- uCGACCU-----UAUGGUUCGgUa--CCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 7813 | 0.75 | 0.64082 |
Target: 5'- cAGCUGGAcgGCgucaAGGCCAUccGGCGCCa -3' miRNA: 3'- -UCGACCUuaUGg---UUCGGUAc-CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 112733 | 0.75 | 0.64082 |
Target: 5'- uGCUGGAGUcgcgcuuccaGCgCGAGcCCAUGGGCGgCa -3' miRNA: 3'- uCGACCUUA----------UG-GUUC-GGUACCCGUgG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 119759 | 0.77 | 0.549719 |
Target: 5'- cAGCUGGAGUACC-AGCaCAccUGGG-ACCg -3' miRNA: 3'- -UCGACCUUAUGGuUCG-GU--ACCCgUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 130164 | 0.78 | 0.520123 |
Target: 5'- cGCUGGccgACCGGGCCGUGaccgugccGGCGCCc -3' miRNA: 3'- uCGACCuuaUGGUUCGGUAC--------CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 173592 | 0.79 | 0.453786 |
Target: 5'- uGCUGGuc--CCAGGCCAUGaGCACCa -3' miRNA: 3'- uCGACCuuauGGUUCGGUACcCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 89162 | 0.79 | 0.444681 |
Target: 5'- -cCUGGAcgGCUggGCCGUGGGCcugGCCc -3' miRNA: 3'- ucGACCUuaUGGuuCGGUACCCG---UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 157250 | 0.66 | 0.987415 |
Target: 5'- cGGCUGac-UACCAAGCuCAucgacgucaaccuggUGGGCcCCg -3' miRNA: 3'- -UCGACcuuAUGGUUCG-GU---------------ACCCGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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