Results 1 - 20 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14575 | 3' | -53.7 | NC_003521.1 | + | 888 | 1.13 | 0.003681 |
Target: 5'- gAGCUGGAAUACCAAGCCAUGGGCACCa -3' miRNA: 3'- -UCGACCUUAUGGUUCGGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 122714 | 0.72 | 0.797166 |
Target: 5'- gGGCUGGAGgcgguCguGGUCGUGGGCgacggcGCCg -3' miRNA: 3'- -UCGACCUUau---GguUCGGUACCCG------UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 149157 | 0.72 | 0.814796 |
Target: 5'- cGCUgcGGAAUgcGCCAgggAGCCGcGGGCACg -3' miRNA: 3'- uCGA--CCUUA--UGGU---UCGGUaCCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 157250 | 0.66 | 0.987415 |
Target: 5'- cGGCUGac-UACCAAGCuCAucgacgucaaccuggUGGGCcCCg -3' miRNA: 3'- -UCGACcuuAUGGUUCG-GU---------------ACCCGuGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 119759 | 0.77 | 0.549719 |
Target: 5'- cAGCUGGAGUACC-AGCaCAccUGGG-ACCg -3' miRNA: 3'- -UCGACCUUAUGGuUCG-GU--ACCCgUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 112733 | 0.75 | 0.64082 |
Target: 5'- uGCUGGAGUcgcgcuuccaGCgCGAGcCCAUGGGCGgCa -3' miRNA: 3'- uCGACCUUA----------UG-GUUC-GGUACCCGUgG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 113546 | 0.75 | 0.64082 |
Target: 5'- cGGCgugucGGAcGUGCCGcGCC-UGGGCGCCa -3' miRNA: 3'- -UCGa----CCU-UAUGGUuCGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 18540 | 0.75 | 0.671333 |
Target: 5'- cGCUGGc--ACgGGGCUcUGGGCACCa -3' miRNA: 3'- uCGACCuuaUGgUUCGGuACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 1538 | 0.74 | 0.69153 |
Target: 5'- gAGCUGGAAaACUacGAGCCGUucgccucGGCGCCa -3' miRNA: 3'- -UCGACCUUaUGG--UUCGGUAc------CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 160306 | 0.72 | 0.788125 |
Target: 5'- aGGCggugGGcAcgGCCAucggAGCCGUGGGCGgCg -3' miRNA: 3'- -UCGa---CC-UuaUGGU----UCGGUACCCGUgG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 200316 | 0.74 | 0.725376 |
Target: 5'- uGCUGGAGgaguucgagaugcgcUGCgGcGCCGUGGcGCGCCg -3' miRNA: 3'- uCGACCUU---------------AUGgUuCGGUACC-CGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 106112 | 0.75 | 0.671333 |
Target: 5'- gGGCacgGGcGUGgC-GGCCGUGGGCACCu -3' miRNA: 3'- -UCGa--CCuUAUgGuUCGGUACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 89162 | 0.79 | 0.444681 |
Target: 5'- -cCUGGAcgGCUggGCCGUGGGCcugGCCc -3' miRNA: 3'- ucGACCUuaUGGuuCGGUACCCG---UGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 137522 | 0.73 | 0.73712 |
Target: 5'- uGCUGGAGUACCGgcgcgugguGGCCuacgacgagacGGCGCCg -3' miRNA: 3'- uCGACCUUAUGGU---------UCGGuac--------CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 173592 | 0.79 | 0.453786 |
Target: 5'- uGCUGGuc--CCAGGCCAUGaGCACCa -3' miRNA: 3'- uCGACCuuauGGUUCGGUACcCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 155386 | 0.75 | 0.671333 |
Target: 5'- cGGCgcGGAcgACgAGGCCGgcggggggcUGGGCACCg -3' miRNA: 3'- -UCGa-CCUuaUGgUUCGGU---------ACCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 95157 | 0.73 | 0.769633 |
Target: 5'- gAGCaGGAAcuCgCGGGCCGaGGGCACCu -3' miRNA: 3'- -UCGaCCUUauG-GUUCGGUaCCCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 98967 | 0.72 | 0.814796 |
Target: 5'- uGGCUGGugaggcGGUGCCGggAGCCGUaGGCGCg -3' miRNA: 3'- -UCGACC------UUAUGGU--UCGGUAcCCGUGg -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 130164 | 0.78 | 0.520123 |
Target: 5'- cGCUGGccgACCGGGCCGUGaccgugccGGCGCCc -3' miRNA: 3'- uCGACCuuaUGGUUCGGUAC--------CCGUGG- -5' |
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14575 | 3' | -53.7 | NC_003521.1 | + | 7813 | 0.75 | 0.64082 |
Target: 5'- cAGCUGGAcgGCgucaAGGCCAUccGGCGCCa -3' miRNA: 3'- -UCGACCUuaUGg---UUCGGUAc-CCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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