miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 177803 0.71 0.839988
Target:  5'- cGCUGGuggGC---GUCGUGGGCGCCg -3'
miRNA:   3'- uCGACCuuaUGguuCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 149157 0.72 0.814796
Target:  5'- cGCUgcGGAAUgcGCCAgggAGCCGcGGGCACg -3'
miRNA:   3'- uCGA--CCUUA--UGGU---UCGGUaCCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 106112 0.75 0.671333
Target:  5'- gGGCacgGGcGUGgC-GGCCGUGGGCACCu -3'
miRNA:   3'- -UCGa--CCuUAUgGuUCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 130164 0.78 0.520123
Target:  5'- cGCUGGccgACCGGGCCGUGaccgugccGGCGCCc -3'
miRNA:   3'- uCGACCuuaUGGUUCGGUAC--------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 179468 0.7 0.910879
Target:  5'- uGCaGGAAg--CGGGCCGUGGGCAg- -3'
miRNA:   3'- uCGaCCUUaugGUUCGGUACCCGUgg -5'
14575 3' -53.7 NC_003521.1 + 8524 0.7 0.878141
Target:  5'- cGGUUGauuGUGCCcGGaCCGUGGGCGCg -3'
miRNA:   3'- -UCGACcu-UAUGGuUC-GGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 122714 0.72 0.797166
Target:  5'- gGGCUGGAGgcgguCguGGUCGUGGGCgacggcGCCg -3'
miRNA:   3'- -UCGACCUUau---GguUCGGUACCCG------UGG- -5'
14575 3' -53.7 NC_003521.1 + 173592 0.79 0.453786
Target:  5'- uGCUGGuc--CCAGGCCAUGaGCACCa -3'
miRNA:   3'- uCGACCuuauGGUUCGGUACcCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 213286 0.71 0.870924
Target:  5'- cGgUGGAG-ACCGucuacGCCAccgUGGGCGCCu -3'
miRNA:   3'- uCgACCUUaUGGUu----CGGU---ACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 89162 0.79 0.444681
Target:  5'- -cCUGGAcgGCUggGCCGUGGGCcugGCCc -3'
miRNA:   3'- ucGACCUuaUGGuuCGGUACCCG---UGG- -5'
14575 3' -53.7 NC_003521.1 + 98967 0.72 0.814796
Target:  5'- uGGCUGGugaggcGGUGCCGggAGCCGUaGGCGCg -3'
miRNA:   3'- -UCGACC------UUAUGGU--UCGGUAcCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 35141 0.71 0.848019
Target:  5'- uGCUGGccUACCugaCCGUGGGCAUg -3'
miRNA:   3'- uCGACCuuAUGGuucGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 137522 0.73 0.73712
Target:  5'- uGCUGGAGUACCGgcgcgugguGGCCuacgacgagacGGCGCCg -3'
miRNA:   3'- uCGACCUUAUGGU---------UCGGuac--------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 1538 0.74 0.69153
Target:  5'- gAGCUGGAAaACUacGAGCCGUucgccucGGCGCCa -3'
miRNA:   3'- -UCGACCUUaUGG--UUCGGUAc------CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 113546 0.75 0.64082
Target:  5'- cGGCgugucGGAcGUGCCGcGCC-UGGGCGCCa -3'
miRNA:   3'- -UCGa----CCU-UAUGGUuCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 119759 0.77 0.549719
Target:  5'- cAGCUGGAGUACC-AGCaCAccUGGG-ACCg -3'
miRNA:   3'- -UCGACCUUAUGGuUCG-GU--ACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 148713 0.69 0.922352
Target:  5'- cGCacccgGGggUuCCGA-CCcgGGGCACCg -3'
miRNA:   3'- uCGa----CCuuAuGGUUcGGuaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 40749 0.69 0.916733
Target:  5'- uGCUGGcgagGCCAAGCCGgcGGUaaGCCa -3'
miRNA:   3'- uCGACCuua-UGGUUCGGUacCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 20634 0.7 0.90479
Target:  5'- uGCUcGGAGaGCCGcGCgCugGUGGGCGCCu -3'
miRNA:   3'- uCGA-CCUUaUGGUuCG-G--UACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 95557 0.7 0.891917
Target:  5'- gAGCUGGcc-GCCgAGGCCGagGaGGCGCCc -3'
miRNA:   3'- -UCGACCuuaUGG-UUCGGUa-C-CCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.