miRNA display CGI


Results 61 - 80 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 40749 0.69 0.916733
Target:  5'- uGCUGGcgagGCCAAGCCGgcGGUaaGCCa -3'
miRNA:   3'- uCGACCuua-UGGUUCGGUacCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 171301 0.69 0.927733
Target:  5'- gGGCUGGAaggcgGUGCUggGCCucaacgcGGccuGCGCCg -3'
miRNA:   3'- -UCGACCU-----UAUGGuuCGGua-----CC---CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 112733 0.75 0.64082
Target:  5'- uGCUGGAGUcgcgcuuccaGCgCGAGcCCAUGGGCGgCa -3'
miRNA:   3'- uCGACCUUA----------UG-GUUC-GGUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 18540 0.75 0.671333
Target:  5'- cGCUGGc--ACgGGGCUcUGGGCACCa -3'
miRNA:   3'- uCGACCuuaUGgUUCGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 16275 0.74 0.69153
Target:  5'- cGCUGGuuccUGCUGGgcGCCGUGGGUGCCu -3'
miRNA:   3'- uCGACCuu--AUGGUU--CGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 95157 0.73 0.769633
Target:  5'- gAGCaGGAAcuCgCGGGCCGaGGGCACCu -3'
miRNA:   3'- -UCGaCCUUauG-GUUCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 196951 0.72 0.823368
Target:  5'- uAGCgUGGGcgacgGCCcggGAGCCGgccgGGGCGCCu -3'
miRNA:   3'- -UCG-ACCUua---UGG---UUCGGUa---CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 35141 0.71 0.848019
Target:  5'- uGCUGGccUACCugaCCGUGGGCAUg -3'
miRNA:   3'- uCGACCuuAUGGuucGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 8524 0.7 0.878141
Target:  5'- cGGUUGauuGUGCCcGGaCCGUGGGCGCg -3'
miRNA:   3'- -UCGACcu-UAUGGuUC-GGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 134741 0.7 0.903544
Target:  5'- cAGCUacaacuuCCAGGCCAUcuuuccGGGCACCa -3'
miRNA:   3'- -UCGAccuuau-GGUUCGGUA------CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 185124 0.66 0.981552
Target:  5'- uGCUGGAGcacgggaugcgcaacUGCCAguuccucucgguggGGCCcgacgacgagGUGGcGCACCu -3'
miRNA:   3'- uCGACCUU---------------AUGGU--------------UCGG----------UACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 148632 0.66 0.981347
Target:  5'- gGGCgggGGAGggg-AGGCCA-GGGCAUCg -3'
miRNA:   3'- -UCGa--CCUUauggUUCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 88212 0.69 0.937784
Target:  5'- cGcCUGGug-ACCAA-CCA-GGGCGCCg -3'
miRNA:   3'- uC-GACCuuaUGGUUcGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 24822 0.68 0.945145
Target:  5'- uGCUGGugggcuucuacACCA--CCAUGGGCAUCa -3'
miRNA:   3'- uCGACCuua--------UGGUucGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 78395 0.68 0.946892
Target:  5'- cGGaCUGGAA-ACCGaaAGCgCGUGGGaGCCa -3'
miRNA:   3'- -UC-GACCUUaUGGU--UCG-GUACCCgUGG- -5'
14575 3' -53.7 NC_003521.1 + 148353 0.68 0.955074
Target:  5'- aGGCUGGGAgACCcccgagcgggcAAGCCGagcgGGGUGCg -3'
miRNA:   3'- -UCGACCUUaUGG-----------UUCGGUa---CCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 216111 0.68 0.958825
Target:  5'- -cCUGGGgugacgacAUACCcuGAGUCAUGGGUAUCc -3'
miRNA:   3'- ucGACCU--------UAUGG--UUCGGUACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 93219 0.67 0.962356
Target:  5'- cAGUUcGggUACCA--CC-UGGGCACCu -3'
miRNA:   3'- -UCGAcCuuAUGGUucGGuACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 87076 0.67 0.971673
Target:  5'- gGGCuguacgUGGAuUGgUggGCCAcggUGGGCAUCg -3'
miRNA:   3'- -UCG------ACCUuAUgGuuCGGU---ACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 174213 0.67 0.97688
Target:  5'- cGUUGGggUcGCgCGGGUCGggcagGGGCGCg -3'
miRNA:   3'- uCGACCuuA-UG-GUUCGGUa----CCCGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.