miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 3' -53.7 NC_003521.1 + 114038 0.68 0.958825
Target:  5'- gAGCUGGAccacGCgCAGcGCCA-GGGCcuGCCg -3'
miRNA:   3'- -UCGACCUua--UG-GUU-CGGUaCCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 1352 0.67 0.962356
Target:  5'- cGGCUGGG--GCUGAacgcGCCGcGGGcCACCg -3'
miRNA:   3'- -UCGACCUuaUGGUU----CGGUaCCC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 152273 0.67 0.971673
Target:  5'- cAGCUGGugcccUGCCccgaggAGGCCGUuucGGuGCGCCu -3'
miRNA:   3'- -UCGACCuu---AUGG------UUCGGUA---CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 210407 0.67 0.971673
Target:  5'- cAGCUGGG--ACCGcAGCguggucggCGUGGGCGgCg -3'
miRNA:   3'- -UCGACCUuaUGGU-UCG--------GUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 40749 0.69 0.916733
Target:  5'- uGCUGGcgagGCCAAGCCGgcGGUaaGCCa -3'
miRNA:   3'- uCGACCuua-UGGUUCGGUacCCG--UGG- -5'
14575 3' -53.7 NC_003521.1 + 35141 0.71 0.848019
Target:  5'- uGCUGGccUACCugaCCGUGGGCAUg -3'
miRNA:   3'- uCGACCuuAUGGuucGGUACCCGUGg -5'
14575 3' -53.7 NC_003521.1 + 20634 0.7 0.90479
Target:  5'- uGCUcGGAGaGCCGcGCgCugGUGGGCGCCu -3'
miRNA:   3'- uCGA-CCUUaUGGUuCG-G--UACCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 200316 0.74 0.725376
Target:  5'- uGCUGGAGgaguucgagaugcgcUGCgGcGCCGUGGcGCGCCg -3'
miRNA:   3'- uCGACCUU---------------AUGgUuCGGUACC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 160306 0.72 0.788125
Target:  5'- aGGCggugGGcAcgGCCAucggAGCCGUGGGCGgCg -3'
miRNA:   3'- -UCGa---CC-UuaUGGU----UCGGUACCCGUgG- -5'
14575 3' -53.7 NC_003521.1 + 95557 0.7 0.891917
Target:  5'- gAGCUGGcc-GCCgAGGCCGagGaGGCGCCc -3'
miRNA:   3'- -UCGACCuuaUGG-UUCGGUa-C-CCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 196951 0.72 0.823368
Target:  5'- uAGCgUGGGcgacgGCCcggGAGCCGgccgGGGCGCCu -3'
miRNA:   3'- -UCG-ACCUua---UGG---UUCGGUa---CCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 30949 0.69 0.916733
Target:  5'- cGUaGGuAGUGCCAAGCCA--GGCGCUc -3'
miRNA:   3'- uCGaCC-UUAUGGUUCGGUacCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 215381 0.69 0.916733
Target:  5'- aGGCagaGGAcgGCCAGGaa--GGGCACCa -3'
miRNA:   3'- -UCGa--CCUuaUGGUUCgguaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 145033 0.69 0.932877
Target:  5'- cGCUGGAucGCguGGCCGaGcGGCACg -3'
miRNA:   3'- uCGACCUuaUGguUCGGUaC-CCGUGg -5'
14575 3' -53.7 NC_003521.1 + 181904 0.67 0.971673
Target:  5'- --gUGGuAUACCAGGUCA-GGGCucCCa -3'
miRNA:   3'- ucgACCuUAUGGUUCGGUaCCCGu-GG- -5'
14575 3' -53.7 NC_003521.1 + 223775 0.67 0.96567
Target:  5'- cGCUGucggcGCCGuuaccGCCGUGGGcCGCCa -3'
miRNA:   3'- uCGACcuua-UGGUu----CGGUACCC-GUGG- -5'
14575 3' -53.7 NC_003521.1 + 83217 0.67 0.96567
Target:  5'- cGCUGGggUACaCGGuGCCcucGGcGCACUu -3'
miRNA:   3'- uCGACCuuAUG-GUU-CGGua-CC-CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 113846 0.67 0.968774
Target:  5'- uGCUGGggUuucuuCCGAGC-GUGGcggugguguaaGCGCCg -3'
miRNA:   3'- uCGACCuuAu----GGUUCGgUACC-----------CGUGG- -5'
14575 3' -53.7 NC_003521.1 + 102834 0.67 0.968774
Target:  5'- cGCUGcGAGaAgCGcGCCA-GGGCGCCc -3'
miRNA:   3'- uCGAC-CUUaUgGUuCGGUaCCCGUGG- -5'
14575 3' -53.7 NC_003521.1 + 220277 0.72 0.813062
Target:  5'- uGCUGGggUGCUcguugcccagcguauAGGCCAcgaacaugcacacgaUGGGgACCa -3'
miRNA:   3'- uCGACCuuAUGG---------------UUCGGU---------------ACCCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.