Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14575 | 5' | -53.4 | NC_003521.1 | + | 218346 | 0.66 | 0.990457 |
Target: 5'- cCGGUGUUCAUcaccaGGCaGGCcACCgugaGCCAGg -3' miRNA: 3'- uGCCGCAAGUA-----CCGaUUG-UGG----UGGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 144049 | 0.66 | 0.990457 |
Target: 5'- uGCGGCGcuucugCAUGGCcgagcUGGCGgCGCUGGg -3' miRNA: 3'- -UGCCGCaa----GUACCG-----AUUGUgGUGGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 199994 | 0.66 | 0.990457 |
Target: 5'- -aGGUGUcCAUGGCgcgGGCcCCGCCc- -3' miRNA: 3'- ugCCGCAaGUACCGa--UUGuGGUGGuc -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 109423 | 0.66 | 0.990457 |
Target: 5'- gACGGCGaugCGguccaGGCUGACGCCcgucACCu- -3' miRNA: 3'- -UGCCGCaa-GUa----CCGAUUGUGG----UGGuc -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 78212 | 0.66 | 0.990457 |
Target: 5'- cGCGGCGcUCGUcggaGGCUGucgaGCgaguGCCACCGc -3' miRNA: 3'- -UGCCGCaAGUA----CCGAU----UG----UGGUGGUc -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 128932 | 0.66 | 0.990457 |
Target: 5'- cUGGCGcgccagCGUGGCguuCuCCACCAGc -3' miRNA: 3'- uGCCGCaa----GUACCGauuGuGGUGGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 74593 | 0.66 | 0.990457 |
Target: 5'- cGCGGCGUcccgCGgccGGCgcgccuCGCCGCCGc -3' miRNA: 3'- -UGCCGCAa---GUa--CCGauu---GUGGUGGUc -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 181663 | 0.66 | 0.990457 |
Target: 5'- cGCGGCGc-CGUGccgcaGCUGAU-CCACCAGc -3' miRNA: 3'- -UGCCGCaaGUAC-----CGAUUGuGGUGGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 76226 | 0.66 | 0.990457 |
Target: 5'- gGCGGCGgccgguggCGUGGCgguuACugUcucGCCAGc -3' miRNA: 3'- -UGCCGCaa------GUACCGau--UGugG---UGGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 4315 | 0.66 | 0.990334 |
Target: 5'- gACGGCcgggggcucgaccGUcCAUGcCUGGCGCCACCGc -3' miRNA: 3'- -UGCCG-------------CAaGUACcGAUUGUGGUGGUc -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 217551 | 0.66 | 0.989957 |
Target: 5'- aGCGGUGcacgucgucgccgUCAUGGCgGAgAUCAUCAGg -3' miRNA: 3'- -UGCCGCa------------AGUACCGaUUgUGGUGGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 102318 | 0.66 | 0.989167 |
Target: 5'- cGCGGCaucgucgUCGUGcGCgugGGCGCCgacGCCGGg -3' miRNA: 3'- -UGCCGca-----AGUAC-CGa--UUGUGG---UGGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 238467 | 0.66 | 0.989167 |
Target: 5'- uCGGCGggCggGGCggaGACGCgGcCCAGg -3' miRNA: 3'- uGCCGCaaGuaCCGa--UUGUGgU-GGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 59410 | 0.66 | 0.989167 |
Target: 5'- cUGGagaaGUUCGUGGCacgcgacagcGGCGCCGCCGc -3' miRNA: 3'- uGCCg---CAAGUACCGa---------UUGUGGUGGUc -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 92140 | 0.66 | 0.989167 |
Target: 5'- gGCGGCGgggcUUCccGGCUccuuCCACCGGc -3' miRNA: 3'- -UGCCGC----AAGuaCCGAuuguGGUGGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 67041 | 0.66 | 0.989167 |
Target: 5'- gACGGUGUcCGUGGC---CAUCGCgCAGa -3' miRNA: 3'- -UGCCGCAaGUACCGauuGUGGUG-GUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 38239 | 0.66 | 0.989167 |
Target: 5'- uCGGCGggCggGGCggaGACGCgGcCCAGg -3' miRNA: 3'- uGCCGCaaGuaCCGa--UUGUGgU-GGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 76394 | 0.66 | 0.989167 |
Target: 5'- cGCGGUGgcgCu--GCUAGCACCAgCGGc -3' miRNA: 3'- -UGCCGCaa-GuacCGAUUGUGGUgGUC- -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 200503 | 0.66 | 0.987894 |
Target: 5'- gGCGGCGcgCAccgagcuggccaaggGGCUcAACGCCAUCGa -3' miRNA: 3'- -UGCCGCaaGUa--------------CCGA-UUGUGGUGGUc -5' |
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14575 | 5' | -53.4 | NC_003521.1 | + | 69418 | 0.66 | 0.987745 |
Target: 5'- gACGGUGac---GGCgcGCACCACCAc -3' miRNA: 3'- -UGCCGCaaguaCCGauUGUGGUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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