miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 5' -53.4 NC_003521.1 + 238467 0.66 0.989167
Target:  5'- uCGGCGggCggGGCggaGACGCgGcCCAGg -3'
miRNA:   3'- uGCCGCaaGuaCCGa--UUGUGgU-GGUC- -5'
14575 5' -53.4 NC_003521.1 + 123568 0.66 0.984473
Target:  5'- gACGGCGguggCGggaUGGC-GGCGgCGCCGGg -3'
miRNA:   3'- -UGCCGCaa--GU---ACCGaUUGUgGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 169146 0.66 0.984112
Target:  5'- uACGGCGUgcucaccaagugCGUGGU--GCGCCGCUc- -3'
miRNA:   3'- -UGCCGCAa-----------GUACCGauUGUGGUGGuc -5'
14575 5' -53.4 NC_003521.1 + 66247 0.66 0.986183
Target:  5'- cGCGGCGUgcgagaacuUCGUGaGCcAACAgCAgCAGg -3'
miRNA:   3'- -UGCCGCA---------AGUAC-CGaUUGUgGUgGUC- -5'
14575 5' -53.4 NC_003521.1 + 218346 0.66 0.990457
Target:  5'- cCGGUGUUCAUcaccaGGCaGGCcACCgugaGCCAGg -3'
miRNA:   3'- uGCCGCAAGUA-----CCGaUUG-UGG----UGGUC- -5'
14575 5' -53.4 NC_003521.1 + 59410 0.66 0.989167
Target:  5'- cUGGagaaGUUCGUGGCacgcgacagcGGCGCCGCCGc -3'
miRNA:   3'- uGCCg---CAAGUACCGa---------UUGUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 142777 0.66 0.986183
Target:  5'- cGCGGCGgcgUCGUcGGU----GCCACCAa -3'
miRNA:   3'- -UGCCGCa--AGUA-CCGauugUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 217551 0.66 0.989957
Target:  5'- aGCGGUGcacgucgucgccgUCAUGGCgGAgAUCAUCAGg -3'
miRNA:   3'- -UGCCGCa------------AGUACCGaUUgUGGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 128932 0.66 0.990457
Target:  5'- cUGGCGcgccagCGUGGCguuCuCCACCAGc -3'
miRNA:   3'- uGCCGCaa----GUACCGauuGuGGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 181663 0.66 0.990457
Target:  5'- cGCGGCGc-CGUGccgcaGCUGAU-CCACCAGc -3'
miRNA:   3'- -UGCCGCaaGUAC-----CGAUUGuGGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 67041 0.66 0.989167
Target:  5'- gACGGUGUcCGUGGC---CAUCGCgCAGa -3'
miRNA:   3'- -UGCCGCAaGUACCGauuGUGGUG-GUC- -5'
14575 5' -53.4 NC_003521.1 + 201872 0.66 0.986183
Target:  5'- -gGGCGUcgugcugcccagUCGcUGGCUAACgaucuacuGCCGCCAc -3'
miRNA:   3'- ugCCGCA------------AGU-ACCGAUUG--------UGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 72325 0.66 0.984473
Target:  5'- aACGcGCGguaaCAUcGGCUcgAACugCACCAGc -3'
miRNA:   3'- -UGC-CGCaa--GUA-CCGA--UUGugGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 4315 0.66 0.990334
Target:  5'- gACGGCcgggggcucgaccGUcCAUGcCUGGCGCCACCGc -3'
miRNA:   3'- -UGCCG-------------CAaGUACcGAUUGUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 144049 0.66 0.990457
Target:  5'- uGCGGCGcuucugCAUGGCcgagcUGGCGgCGCUGGg -3'
miRNA:   3'- -UGCCGCaa----GUACCG-----AUUGUgGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 105722 0.66 0.986183
Target:  5'- aGCGGCGg--GUGGUgAAgACCACCu- -3'
miRNA:   3'- -UGCCGCaagUACCGaUUgUGGUGGuc -5'
14575 5' -53.4 NC_003521.1 + 110146 0.66 0.984473
Target:  5'- cACGGCGUaccCGUGGa--AgGCCGCCAu -3'
miRNA:   3'- -UGCCGCAa--GUACCgauUgUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 92140 0.66 0.989167
Target:  5'- gGCGGCGgggcUUCccGGCUccuuCCACCGGc -3'
miRNA:   3'- -UGCCGC----AAGuaCCGAuuguGGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 74593 0.66 0.990457
Target:  5'- cGCGGCGUcccgCGgccGGCgcgccuCGCCGCCGc -3'
miRNA:   3'- -UGCCGCAa---GUa--CCGauu---GUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 102318 0.66 0.989167
Target:  5'- cGCGGCaucgucgUCGUGcGCgugGGCGCCgacGCCGGg -3'
miRNA:   3'- -UGCCGca-----AGUAC-CGa--UUGUGG---UGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.