miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14575 5' -53.4 NC_003521.1 + 98482 0.66 0.987745
Target:  5'- cGCGGCGgcCGUGGCggcggccuCGCgCACcCAGu -3'
miRNA:   3'- -UGCCGCaaGUACCGauu-----GUG-GUG-GUC- -5'
14575 5' -53.4 NC_003521.1 + 77039 0.66 0.987745
Target:  5'- cCGGCGgUgGUGGCgc-CGCUACCGu -3'
miRNA:   3'- uGCCGCaAgUACCGauuGUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 69418 0.66 0.987745
Target:  5'- gACGGUGac---GGCgcGCACCACCAc -3'
miRNA:   3'- -UGCCGCaaguaCCGauUGUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 105722 0.66 0.986183
Target:  5'- aGCGGCGg--GUGGUgAAgACCACCu- -3'
miRNA:   3'- -UGCCGCaagUACCGaUUgUGGUGGuc -5'
14575 5' -53.4 NC_003521.1 + 1645 0.66 0.986183
Target:  5'- -gGGCGUcgugcugcccagUCGcUGGCUAACgaucuacuGCCGCCAc -3'
miRNA:   3'- ugCCGCA------------AGU-ACCGAUUG--------UGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 201872 0.66 0.986183
Target:  5'- -gGGCGUcgugcugcccagUCGcUGGCUAACgaucuacuGCCGCCAc -3'
miRNA:   3'- ugCCGCA------------AGU-ACCGAUUG--------UGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 66247 0.66 0.986183
Target:  5'- cGCGGCGUgcgagaacuUCGUGaGCcAACAgCAgCAGg -3'
miRNA:   3'- -UGCCGCA---------AGUAC-CGaUUGUgGUgGUC- -5'
14575 5' -53.4 NC_003521.1 + 142777 0.66 0.986183
Target:  5'- cGCGGCGgcgUCGUcGGU----GCCACCAa -3'
miRNA:   3'- -UGCCGCa--AGUA-CCGauugUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 72325 0.66 0.984473
Target:  5'- aACGcGCGguaaCAUcGGCUcgAACugCACCAGc -3'
miRNA:   3'- -UGC-CGCaa--GUA-CCGA--UUGugGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 123568 0.66 0.984473
Target:  5'- gACGGCGguggCGggaUGGC-GGCGgCGCCGGg -3'
miRNA:   3'- -UGCCGCaa--GU---ACCGaUUGUgGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 110146 0.66 0.984473
Target:  5'- cACGGCGUaccCGUGGa--AgGCCGCCAu -3'
miRNA:   3'- -UGCCGCAa--GUACCgauUgUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 169146 0.66 0.984112
Target:  5'- uACGGCGUgcucaccaagugCGUGGU--GCGCCGCUc- -3'
miRNA:   3'- -UGCCGCAa-----------GUACCGauUGUGGUGGuc -5'
14575 5' -53.4 NC_003521.1 + 111514 0.67 0.982606
Target:  5'- gGCGGCGgc---GGCgcACGCCAUCAa -3'
miRNA:   3'- -UGCCGCaaguaCCGauUGUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 142885 0.67 0.982606
Target:  5'- aGCGGCGaUCccuUGGagagcGGCGCCAUCAGc -3'
miRNA:   3'- -UGCCGCaAGu--ACCga---UUGUGGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 77571 0.67 0.982606
Target:  5'- cCGGCG-UCAaGGCguugAAgACCGCCGu -3'
miRNA:   3'- uGCCGCaAGUaCCGa---UUgUGGUGGUc -5'
14575 5' -53.4 NC_003521.1 + 100478 0.67 0.982606
Target:  5'- gACGGC---CGUuGCUAcCGCCGCCAGg -3'
miRNA:   3'- -UGCCGcaaGUAcCGAUuGUGGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 77713 0.67 0.982606
Target:  5'- gGCGGCGUUguUGGC-GACgGCgGCCu- -3'
miRNA:   3'- -UGCCGCAAguACCGaUUG-UGgUGGuc -5'
14575 5' -53.4 NC_003521.1 + 106878 0.67 0.982606
Target:  5'- uACGGUGacggUAguagcGGCgcaGCGCCACCAGg -3'
miRNA:   3'- -UGCCGCaa--GUa----CCGau-UGUGGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 6094 0.67 0.981611
Target:  5'- gGCGGCGUUCcgccacggcuaucUGGUUGugauaguucaggaACAgCACCAGa -3'
miRNA:   3'- -UGCCGCAAGu------------ACCGAU-------------UGUgGUGGUC- -5'
14575 5' -53.4 NC_003521.1 + 100716 0.67 0.980575
Target:  5'- gGCGGCGcugUGUcGCaAGCGCUACCAGa -3'
miRNA:   3'- -UGCCGCaa-GUAcCGaUUGUGGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.