miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 30828 0.66 0.609831
Target:  5'- aACCCGCGaacuccacGGGCGCCUuGCgaCGGCaGCGg -3'
miRNA:   3'- cUGGGCGC--------CCUGUGGGuCG--GCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 18686 0.66 0.628411
Target:  5'- -gUCUG-GGGuuuCGCCaUGGCCGGCGCGa -3'
miRNA:   3'- cuGGGCgCCCu--GUGG-GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 61727 0.66 0.619117
Target:  5'- --gCCGCGGGACugguaCAGgaGGCGCGc -3'
miRNA:   3'- cugGGCGCCCUGugg--GUCggCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 216869 0.66 0.61633
Target:  5'- aGGCCCguggaGCGGGACAUCCAgGCCauccaGGCcaccagcuugucguGCGa -3'
miRNA:   3'- -CUGGG-----CGCCCUGUGGGU-CGG-----CCG--------------CGC- -5'
14576 3' -65.6 NC_003521.1 + 212335 0.66 0.60056
Target:  5'- aGCCCGaCGGucACGCCCAucaccacccGCUGGUGCa -3'
miRNA:   3'- cUGGGC-GCCc-UGUGGGU---------CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 145864 0.66 0.582079
Target:  5'- gGGCCCggcgGCGGGcgGCGCCgAcgacgaggccGCCGGCgGCGg -3'
miRNA:   3'- -CUGGG----CGCCC--UGUGGgU----------CGGCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 191560 0.66 0.582079
Target:  5'- uACgUGCGGGcCAUCCuagaGGCCGaGCGCa -3'
miRNA:   3'- cUGgGCGCCCuGUGGG----UCGGC-CGCGc -5'
14576 3' -65.6 NC_003521.1 + 36155 0.66 0.609831
Target:  5'- uGCCCGaggagGaGGACAcCCCGGaCGGCGUGc -3'
miRNA:   3'- cUGGGCg----C-CCUGU-GGGUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 71298 0.66 0.591307
Target:  5'- gGGCCCcUGGGGCA-CCAGCaccuGGgGCGg -3'
miRNA:   3'- -CUGGGcGCCCUGUgGGUCGg---CCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 223393 0.66 0.599634
Target:  5'- cGCCCcgacGCGGGccgugugGCGcCCCGGCgCGGCGUc -3'
miRNA:   3'- cUGGG----CGCCC-------UGU-GGGUCG-GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 82746 0.66 0.624692
Target:  5'- cGCuuGCGGGACGagaucacgcgcgaCCGGCgGGcCGUGg -3'
miRNA:   3'- cUGggCGCCCUGUg------------GGUCGgCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 161969 0.66 0.582079
Target:  5'- cGACCgGCGGaucacCACCUucGGCUGGUGCu -3'
miRNA:   3'- -CUGGgCGCCcu---GUGGG--UCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 217607 0.66 0.637706
Target:  5'- gGACCaGCaGGGGCGuCUCGGCCgccaucuccucGGCGUGg -3'
miRNA:   3'- -CUGGgCG-CCCUGU-GGGUCGG-----------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 214610 0.66 0.582079
Target:  5'- aGAgCUGCGGGuaGCCCAGCCagaccaGCGUGc -3'
miRNA:   3'- -CUgGGCGCCCugUGGGUCGGc-----CGCGC- -5'
14576 3' -65.6 NC_003521.1 + 133189 0.66 0.582079
Target:  5'- cGGCCuCGgcgauCGGGACgACCgCGGUCGGgGCGc -3'
miRNA:   3'- -CUGG-GC-----GCCCUG-UGG-GUCGGCCgCGC- -5'
14576 3' -65.6 NC_003521.1 + 88548 0.66 0.60056
Target:  5'- cGGCCUccuCGGGGCAgggcaCCAGCUGGCccGCGu -3'
miRNA:   3'- -CUGGGc--GCCCUGUg----GGUCGGCCG--CGC- -5'
14576 3' -65.6 NC_003521.1 + 132686 0.66 0.609831
Target:  5'- cGAUCgGCuc-GCGCCCGGCUGGCGgGa -3'
miRNA:   3'- -CUGGgCGcccUGUGGGUCGGCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 217406 0.66 0.60056
Target:  5'- aGGCUgaGCGGcGGCAUgaAGCCGGUGCa -3'
miRNA:   3'- -CUGGg-CGCC-CUGUGggUCGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 110627 0.66 0.637706
Target:  5'- --aCCGCGGGcaucgGCAUCUcGCCGgGCGCc -3'
miRNA:   3'- cugGGCGCCC-----UGUGGGuCGGC-CGCGc -5'
14576 3' -65.6 NC_003521.1 + 214809 0.66 0.582079
Target:  5'- --gCCGUcGGGCGCCgGGCgCGGCGaCGg -3'
miRNA:   3'- cugGGCGcCCUGUGGgUCG-GCCGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.