miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 3' -65.6 NC_003521.1 + 85390 0.66 0.613544
Target:  5'- cGCCCaGCGGGuCGgCCAGCuCgcacagcuccugguaGGCGCGc -3'
miRNA:   3'- cUGGG-CGCCCuGUgGGUCG-G---------------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 104903 0.66 0.609831
Target:  5'- -uCCCGCGGccGugGCCgaGGCCGGCa-- -3'
miRNA:   3'- cuGGGCGCC--CugUGGg-UCGGCCGcgc -5'
14576 3' -65.6 NC_003521.1 + 61727 0.66 0.619117
Target:  5'- --gCCGCGGGACugguaCAGgaGGCGCGc -3'
miRNA:   3'- cugGGCGCCCUGugg--GUCggCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 82746 0.66 0.624692
Target:  5'- cGCuuGCGGGACGagaucacgcgcgaCCGGCgGGcCGUGg -3'
miRNA:   3'- cUGggCGCCCUGUg------------GGUCGgCC-GCGC- -5'
14576 3' -65.6 NC_003521.1 + 88548 0.66 0.60056
Target:  5'- cGGCCUccuCGGGGCAgggcaCCAGCUGGCccGCGu -3'
miRNA:   3'- -CUGGGc--GCCCUGUg----GGUCGGCCG--CGC- -5'
14576 3' -65.6 NC_003521.1 + 212335 0.66 0.60056
Target:  5'- aGCCCGaCGGucACGCCCAucaccacccGCUGGUGCa -3'
miRNA:   3'- cUGGGC-GCCc-UGUGGGU---------CGGCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 123338 0.66 0.637706
Target:  5'- -cCCCGCcGGACagGCCCGucGCCgGGUGUGg -3'
miRNA:   3'- cuGGGCGcCCUG--UGGGU--CGG-CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 132686 0.66 0.609831
Target:  5'- cGAUCgGCuc-GCGCCCGGCUGGCGgGa -3'
miRNA:   3'- -CUGGgCGcccUGUGGGUCGGCCGCgC- -5'
14576 3' -65.6 NC_003521.1 + 216869 0.66 0.61633
Target:  5'- aGGCCCguggaGCGGGACAUCCAgGCCauccaGGCcaccagcuugucguGCGa -3'
miRNA:   3'- -CUGGG-----CGCCCUGUGGGU-CGG-----CCG--------------CGC- -5'
14576 3' -65.6 NC_003521.1 + 18686 0.66 0.628411
Target:  5'- -gUCUG-GGGuuuCGCCaUGGCCGGCGCGa -3'
miRNA:   3'- cuGGGCgCCCu--GUGG-GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 110627 0.66 0.637706
Target:  5'- --aCCGCGGGcaucgGCAUCUcGCCGgGCGCc -3'
miRNA:   3'- cugGGCGCCC-----UGUGGGuCGGC-CGCGc -5'
14576 3' -65.6 NC_003521.1 + 217607 0.66 0.637706
Target:  5'- gGACCaGCaGGGGCGuCUCGGCCgccaucuccucGGCGUGg -3'
miRNA:   3'- -CUGGgCG-CCCUGU-GGGUCGG-----------CCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 106754 0.66 0.609831
Target:  5'- -cUCCGCGuccaGGGCGCCCAGgCGGUcgaaaccagGCGu -3'
miRNA:   3'- cuGGGCGC----CCUGUGGGUCgGCCG---------CGC- -5'
14576 3' -65.6 NC_003521.1 + 115804 0.66 0.609831
Target:  5'- uACCCGC-GGAUGCgCAGCCugcuGCGCa -3'
miRNA:   3'- cUGGGCGcCCUGUGgGUCGGc---CGCGc -5'
14576 3' -65.6 NC_003521.1 + 26728 0.66 0.590383
Target:  5'- cACCCuGCuGGuccuGACGCCCgugauguGGUCGGCGCGc -3'
miRNA:   3'- cUGGG-CG-CC----CUGUGGG-------UCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 30828 0.66 0.609831
Target:  5'- aACCCGCGaacuccacGGGCGCCUuGCgaCGGCaGCGg -3'
miRNA:   3'- cUGGGCGC--------CCUGUGGGuCG--GCCG-CGC- -5'
14576 3' -65.6 NC_003521.1 + 169312 0.66 0.60056
Target:  5'- cGGCCgGCGucGGuCGCagcgucgCGGCCGGCGUGg -3'
miRNA:   3'- -CUGGgCGC--CCuGUGg------GUCGGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 36155 0.66 0.609831
Target:  5'- uGCCCGaggagGaGGACAcCCCGGaCGGCGUGc -3'
miRNA:   3'- cUGGGCg----C-CCUGU-GGGUCgGCCGCGC- -5'
14576 3' -65.6 NC_003521.1 + 85167 0.66 0.62841
Target:  5'- aGACCUcCGccGcCACCCAGCaCGGCGCu -3'
miRNA:   3'- -CUGGGcGCc-CuGUGGGUCG-GCCGCGc -5'
14576 3' -65.6 NC_003521.1 + 161969 0.66 0.582079
Target:  5'- cGACCgGCGGaucacCACCUucGGCUGGUGCu -3'
miRNA:   3'- -CUGGgCGCCcu---GUGGG--UCGGCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.